BAC Information

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BAC

Clone NameMSMg01-441E04
Chromosome16 (Build37)
Map Location 51,522,213 - 51,522,768
singlet/doubletsinglet
Overlap genenone
Upstream geneCcdc54, LOC672778, 5330426P16Rik, EG639820, LOC627543
Downstream geneCblb, Alcam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441E04.T7 (MSMg01no441_e04.b1)MSMg01-441E04.TJ (MSMg01no441_e04.g1)
ACCAG531184AG531185
length734723
length of high quality
(start - end)
555 (78 - 632)178 (83 - 260)
definitionCHROMAT_FILE: MSMg01no441_e04.b1 PHD_FILE: MSMg01no441_e04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:58 2005CHROMAT_FILE: MSMg01no441_e04.g1 PHD_FILE: MSMg01no441_e04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGGNGGTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXTATCAGAGAGGA
TCCGCGGAATTCACCATTTAACTGGACAGTCTCAACACCCAGGGCTGGAG
CTGGTTAAAAGTGGTTTGCAGCTATATTTTAAAGAAAATCTATAATTACC
TGCATAGCTCTGTTGTCAAGATTCTCTATATTATTTAGGAGAAGACATTA
AGTTTGTTTTTTTTCCAGTTTTTGAAAATATCATCTTTTTATTCATCCCC
AAACAATAGCCCACTGAATCATTATGACAGTCTACACCTCGTATTCAAAA
TTTTAAAATCCATGAGATCCAAAAGACTAGAGTTTATTTTCATGCATTTT
CTGGTGTAATTCAACCTTAGTTGAACTCAACTCACAGTTAAAACTCACCT
TACCTCACATAAAGCTATGAATATTCTTCATTTATGCACGGAGTGTTTGT
ACTTTACAATCCAGTGTCTTTGATTACAGAACTCTGCTCTGGGTTTAGGA
GGGATATTATGGTGTGTGTAGCATATGTTGTGTTTCATCTTGTCAAATTG
GAAGCAGTAAGAGAGATAAAATATTTGCATTGAAGGATTCATTGAAGTGA
TTGTGAAACTGTATTCTTGCTGTAGTAACAGATTCTGGTTTTTCTTATAG
GTATAATTATTATGTATAACATGGAAGTTTGAGTTACAATTTACATCTTT
GCCGCAAGTCACATCATTTCTGGATTGCATTTAT
NGGGCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGCCTTTAGGCCCAAA
GAAAGTCACCCTGGCCATTACCAGAACCTGCAATGCAAATGTGCTATTGT
TAGAGGCTCTTAGAAGCTGTCTTGAGAGTTAACAATTACCAGGTATTCCT
TGTGACTCTTGTAACTTTACAATTCCTTGTGACTCTTAACTGGNNGTATT
CTTTGGTATCTTTCCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNATA
AANATCCCCNNNNNNGGGGCGCCTCCCTCCCTCCCCNTNTTTTTTTTATC
CCCCCTCCCCTCCCCCCAAAAAAAAAAAANATTTTTTTTTCCCCCTTGTG
GGGAGGAGANNATNTNTTTTNTTTTTTTTTTTTTTTCGCCGCGTGGGGGG
GGNNGCGCTTTATNTTTCTCCCTTCCTTTTTCTCCCCTCCTCCCCCTCTC
TTGTTTCTTTNTTTTGTTAAAGAGAAAAAAAAAGAATAAAAATTTTGGGG
AGTCTTTTCCCGCCTCCTCTCCCCTCTTCCCCTCTTTGTTGATTCTNTTT
CGNNNCTTCTCTATCCACCCCACCCCCCNTCGTCGNNTTTCANTAACTCC
CATATATANNCATATTTGCTTTCCCTCTCTTNTTTTTTTTTTTTTTTTTT
TTTATTGTTTTTTTGTTGTGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_e04.b1 MSMg01no441_e04.b1 CHROMAT_FILE:
MSMg01no441_e04.b1 PHD_FILE: MSMg01no441_e04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:58 2005
         (555 letters)



>mm_chr16_51522013_51522968
          Length = 956

 Score = 1044 bits (540), Expect = 0.0
 Identities = 552/556 (99%), Gaps = 1/556 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtctcaacacccagggctggagctggttaaaagtggtttgcagctatattttaaagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtctcaacacccagggctggagctggttaaaagtggtttgcagctatattttaaagaaa 260

                                                                       
Query: 61  atctataattacctgcatagctctgttgtcaagattctctatattatttaggagaagaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctataattacctgcatagctctgttgtcaagattctctatattatttaggagaagaca 320

                                                                       
Query: 121 ttaagtttgtttttttt-ccagtttttgaaaatatcatctttttattcatccccaaacaa 179
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaagtttgtttttttttccagtttttgaaaatatcatctttttattcatccccaaacaa 380

                                                                       
Query: 180 tagcccactgaatcattatgacagtctacacctcgtattcaaaattttaaaatccatgag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagcccactgaatcattatgacagtctacacctcgtattcaaaattttaaaatccatgag 440

                                                                       
Query: 240 atccaaaagactagagtttattttcatgcattttctggtgtaattcaaccttagttgaac 299
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atccaaaagactagagttgattttcatgcattttctggtgtaattcaaccttagttgaac 500

                                                                       
Query: 300 tcaactcacagttaaaactcaccttacctcacataaagctatgaatattcttcatttatg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaactcacagttaaaactcaccttacctcacataaagctatgaatattcttcatttatg 560

                                                                       
Query: 360 cacggagtgtttgtactttacaatccagtgtctttgattacagaactctgctctgggttt 419
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacagagtgtttgtactttacaatccagtgtctttgattacagaactctgctctgggttt 620

                                                                       
Query: 420 aggagggatattatggtgtgtgtagcatatgttgtgtttcatcttgtcaaattggaagca 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggagggatattatggtgtgtgtagcatatgttgtgtttcatcttgtcaaattggaagca 680

                                                                       
Query: 480 gtaagagagataaaatatttgcattgaaggattcattgaagtgattgtgaaactgtattc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 681 gtaagagagataaaatatttgcattgaaggattcattgaagtgattgtgaaactgtattt 740

                           
Query: 540 ttgctgtagtaacaga 555
           ||||||||||||||||
Sbjct: 741 ttgctgtagtaacaga 756


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 956
Length adjustment: 10
Effective length of query: 545
Effective length of database: 946
Effective search space:   515570
Effective search space used:   515570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)