BAC Information

Click to search

BAC

Clone NameMSMg01-442G24
Chromosome16 (Build37)
Map Location 29,413,999 - 29,414,304
singlet/doubletsinglet
Overlap geneAtp13a4
Upstream geneFgf12, 1600021P15Rik, EG666717, Hrasls, Atp13a5
Downstream geneOpa1, Gm1968, LOC100043102, 9030404E10Rik, Hes1, EG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442G24.T7 (MSMg01no442_g24.b1)MSMg01-442G24.TJ (MSMg01no442_g24.g1)
ACCAG532084AG532085
length848871
length of high quality
(start - end)
310 (47 - 356)98 (77 - 174)
definitionCHROMAT_FILE: MSMg01no442_g24.b1 PHD_FILE: MSMg01no442_g24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:36 2005CHROMAT_FILE: MSMg01no442_g24.g1 PHD_FILE: MSMg01no442_g24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACTTGCTCTGACTTTCTATCAGGGAAAACTGTGTAAGATTATCA
AATAGCTGTTATGTGTGACTATTGGGGATGCATAGTTTATTGTACCAGAC
CAAAGCCACACGTTCTGTTAGTCATCAGTAAAGGGACAGGACAGATCTGG
CATGTGGTCCCCTTAGCTCTGGGTATCGCGGATGTAGGACACCCTGCCTG
GGAAGCACACACAGGAAGTTGTCCTGAAACTAGAGGCTTTCACAGACATG
GGTCTCCCTACCCTCTGCAGCCTCCACCACTCACTAACCCGAACCGTGGT
GTGTTTTCAGTAAGCTTCTTGAAAAACTTTAAAGTTGCAGGGAGACACAG
TGCGATTCTTGCGAAGCTTCCTCCACACCCTTTTATTCCTTTAATCTGCT
TTTCTTTTTGGTTTCCTAAATAAATACATCCCTTTCCCCATTATTCTGCC
TCTATTCTTCCCCTTTTTCCTTCCCTACTTTTTATTTTTTGCTTATTCCT
TTCTACTTTTTCTCCTTTTTTGTCCGTTTCGCCTTTTTTTTTAATTCCTT
TTTTCCCCCTCATTTTATGCTCCTCTCCTTCATCTTTTCTCCTCTCTTCT
TCCCTTCCTTTTCTTTCTTTTCATTCGTCTACACCATCTGTCCTCCGTTT
TTTTTTCGACTATCCATTTTTTTCTCAACTCTTATCCTCTTCTTTCTTTT
TTTTTCTTTTTTCTCCCTTCCTACCTCTCTTTCTTTTTCTTTTTCCCCTC
CCCCCCTCTTTATTTCTTTTCTCCTTCTTTTCTTTCTTTCTCCCCTTG
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGTCAAATCAAATAGTAAATGTA
TTGTGTGAACAGAATATGTATTTATGTATCTGTGTTGTGCATGTGTGTGA
TTAGGTGTCTATATGTGTCTATGTGTATGTATGTCTTGTCCTTCCCCCCT
GCTCGCCCCCCCGCCCCCCTCGCCCCCGCCCTCCCCCTCGCCTCTCCTGC
CCCCTCTTTTTTTTTCCCCTCCTCTTCCTTTGTCGTCTCTCCTTTCCGCC
GCCCCCTTTCCCCCCCCTTCCTTCCCCTTTTTTTTTTTTCGCCTCTCTTC
GCCTCCTCTCCCCCCCTTCCTCTCTTTCCCCCCCCCCCTTCTTGCCTCTG
CCCCCCTCCCCCACCCCCCCCCCCCCCCCCTCCCCCCTCCTTTCTCCTTT
CTTTCTCTCCCCCCTTCTCTTCCTCTTTTCCCCCCCTTTCCCTCTCTTTC
TCCCCCCCTTCCTCTCCTCCCCTTCTTCTCCTCCTCTCCTCCCCTCCTCC
TCCTCTCCCCCCCTCTTTTCCTCCCCCCCCCTCCCTTTTTCCCCCCCTTC
CTCCTTCTCCCCCTCTCTCTCCCTTCTCCCCCCCCCCCTTTTCCCTCTTC
CCCCCTCCTTCCTCCCCTCCCCTTCTCTTCCTTCCCTCCCCCCCCCCTTT
CCTCCCTCCTCCCTCTCCTCCCCTTCTCCCTCTTCTTCTTTCTCCCCCTC
CCTTTTTCCTCTCTCTTCCCTCTCTCTCCTTTTTCTCCTCTCCACTCCCC
CCCTTTTCTCTTCTCCCCCCCCCTCTCNCCCCCACCACCCTTCTCTCCTC
TTCCCCTCTTCTCTCCTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_g24.b1 MSMg01no442_g24.b1 CHROMAT_FILE:
MSMg01no442_g24.b1 PHD_FILE: MSMg01no442_g24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:36 2005
         (310 letters)



>mm_chr16_29413795_29414504
          Length = 710

 Score =  545 bits (282), Expect = e-159
 Identities = 300/306 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacttgctctgactttctatcagggaaaactgtgtaagattatcaaatagctgtt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gaattcacttgctctgactttctatcagggaaaactgtgtaagattatcaaatagctgtt 451

                                                                       
Query: 65  atgtgtgactattggggatgcatagtttattgtaccagaccaaagccacacgttctgtta 124
           |||||||||||||||||| |||| |||||||| |||||||||||||||||| ||||||||
Sbjct: 450 atgtgtgactattggggacgcatggtttattgcaccagaccaaagccacacattctgtta 391

                                                                       
Query: 125 gtcatcagtaaagggacaggacagatctggcatgtggtccccttagctctgggtatcgcg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 390 gtcatcagtaaagggacaggacagatctggcatgtggtccccttagctctgggtatcacg 331

                                                                       
Query: 185 gatgtaggacaccctgcctgggaagcacacacaggaagttgtcctgaaactagaggcttt 244
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 330 gatgtaggacaccctgcctgggaagcacacacaggaagttgtcctgaagctagaggcttt 271

                                                                       
Query: 245 cacagacatgggtctccctaccctctgcagcctccaccactcactaacccgaaccgtggt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 cacagacatgggtctccctaccctctgcagcctccaccactcactaacccgaaccgtggt 211

                 
Query: 305 gtgttt 310
           ||||||
Sbjct: 210 gtgttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)