BAC Information

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BAC

Clone NameMSMg01-443I04
Chromosome16 (Build37)
Map Location 57,554,733 - 57,555,056
singlet/doubletsinglet
Overlap gene2610528E23Rik
Upstream geneAbi3bp, Tfg, Gpr128, Tmem45a, LOC668026, LOC668036, 2310005G13Rik, Tomm70a, Nit2, Tbc1d23, Tmem30c, 4631422O05Rik
Downstream geneCol8a1, LOC435480, LOC629342, LOC100043477, Dcbld2, St3gal6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443I04.T7 (MSMg01no443_i04.b1)MSMg01-443I04.TJ (MSMg01no443_i04.g1)
ACCAG532899AG532900
length716725
length of high quality
(start - end)
189 (128 - 316)327 (82 - 408)
definitionCHROMAT_FILE: MSMg01no443_i04.b1 PHD_FILE: MSMg01no443_i04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:08 2005CHROMAT_FILE: MSMg01no443_i04.g1 PHD_FILE: MSMg01no443_i04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCGCTCAAATTTGCGGCGCTAAACGAANCACATTTTTCGTACCCGGCG
GNANNCNNNNATTTTTCCAAAAAACAGTTATTTATTTATTTTTAATTAGG
TATTTTCTTTGTTTACTTTTCACACCGCTATCCCAAAAATCTCCATACCC
TCCTCCCCCAACTCCCCTACCCACTCACTCCCACTTCTTGGCCCTGTCTT
TCCCCTGTACTGAGGCATATACAGTTTGCAAGACCAAGGAGCCTCTCTTC
CCAATTATGGCCGACTAGGCCATCTTCTGATTCACATGCAGCTAGAGTCA
AGAGCTCCAGGGGGTACTATTTATTTTTTATTGCTGTTCCACCTATAGGG
TTGCAGACCCCTTTATCTCCTTCGCCACTTTCTCTAGCTTCTCCATTGGG
GACCCTGTATTCCACCCCATAGCTGACTGTGAGCATCTACTTCCGTGCCC
GTCATGCACTGTTATACCCCCCCTTTATATATCTATATAAGTGTCCTTTC
ATCAAAATCCCGCTGGTGTACCCATCTTAGTCATCGTTCGGATCGTGAAC
ATGGTATGTACCTCTGTATACGGCCGTTCCTAGATGGCCCACCCTTTACT
CTCAATTCCAAAATTATGTCCCGTAAATCCTTACAATTGTTGTTTTTTTC
CCTTTCCCCTTCAATCCCCACTGTTTCCCCTTTCTGCTTACACCCTTTTT
ATCCAACCTTCTGCGG
TTTAACGATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCCTTGGTTAAAGAACC
GGTTCAGCCAACCTAGACAGACTCTTAGCTCAGCTGCCTCCTTCCCACCC
CCAAATTAAATAACAGAATATAGTTAATTGCTGAGCTTGCTTGTTAGTGA
TGCTACTGGTTACAGACAGATAGTATTGTCTCATTGGAGAAACTAAAGAG
TTTTAGGAATAATAGGCTCTGCCATTCATTCACTGGGCCAGTCTCTTGTA
CCCTTGTTTCCCCAAACCTCATATTTGAAATAATGTCATTCCCCAAGTAT
CCCCAAGTATCTCAGTATTTGGGCAAAGACTGAATCGTGGGCAATAGTCC
TTTTATGAATTCTGATCATGTACAGAATTTATTTAATAATTGATCTGTCA
ATACAAATAGATTAATGCACTTCGGCCTAACATAACGACATTAGCCCTGC
AAGAGCTTCAAATCACCGACGGAGTAGCCTCAGGTATAAGGAACCTCTTT
TGAGATATTCTGCTTCTACAAAAGCGGAACAGTCTGATTTATGCGCGCTC
ACAGCCCATTTATTTTGTCAACCCCTGTTTAAAGGTGTATTTTTTTCTCC
CTCCCCCGACCTCTTTTAATTCTGCCTTTCTCTATTTAATACTCGTTTCC
CCGCATTCTTCTTCCCTATCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_i04.g1 MSMg01no443_i04.g1 CHROMAT_FILE:
MSMg01no443_i04.g1 PHD_FILE: MSMg01no443_i04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:08 2005
         (327 letters)



>mm_chr16_57554533_57555259
          Length = 727

 Score =  596 bits (308), Expect = e-175
 Identities = 320/324 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catccttggttaaagaaccggttcagccaacctagacagactcttagctcagctgcctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catccttggttaaagaaccggttcagccaacctagacagactcttagctcagctgcctcc 260

                                                                       
Query: 61  ttcccacccccaaattaaataacagaatatagttaattgctgagcttgcttgttagtgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcccacccccaaattaaataacagaatatagttaattgctgagcttgcttgttagtgat 320

                                                                       
Query: 121 gctactggttacagacagatagtattgtctcattggagaaactaaagagttttaggaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctactggttacagacagatagtattgtctcattggagaaactaaagagttttaggaata 380

                                                                       
Query: 181 ataggctctgccattcattcactgggccagtctcttgtacccttgtttccccaaacctca 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 ataggctctgccattcattcactgggccagcctcttgtacccttgtttccccaaacctca 440

                                                                       
Query: 241 tatttgaaataatgtcattccccaagtatccccaagtatctcagtatttgggcaaagact 300
           ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaaggaaataatgtcattccccaagtatccccaagtatctcagtatttgggcaaagact 500

                                   
Query: 301 gaatcgtgggcaatagtcctttta 324
           ||||||||||||||||||||||||
Sbjct: 501 gaatcgtgggcaatagtcctttta 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)