BAC Information

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BAC

Clone NameMSMg01-443K01
Chromosome16 (Build37)
Map Location 49,374,763 - 49,375,004
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433023, Morc1, Trat1, EG667501, Retnlb, Retnla, Retnlg, 2310047C04Rik, C330027C09Rik, Myh15, 1700026J12Rik, LOC386061
Downstream geneEG216818, LOC628903, Ift57, LOC667796, LOC100043767, Cd47, EG433024, LOC100043769, LOC628951, EG224180, EG667802, LOC100043404, Bbx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443K01.T7 (MSMg01no443_k01.b1)MSMg01-443K01.TJ (MSMg01no443_k01.g1)
ACCAG532989AG532990
length735714
length of high quality
(start - end)
243 (75 - 317)245 (79 - 323)
definitionCHROMAT_FILE: MSMg01no443_k01.b1 PHD_FILE: MSMg01no443_k01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:17 2005CHROMAT_FILE: MSMg01no443_k01.g1 PHD_FILE: MSMg01no443_k01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATTTCTTATATTTGCGGCGCTAAACGACTCCTATAGTCANAAATCCGCG
GAATTCTTTGTTCATACTAGAACCCATTTTTTAATGGGGTTATTTGATTT
TCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTT
TTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
TATTTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTC
TGTTCAGGAATTTTACCTTTGTGCTTTTATCTTCAAGGCTTTTCCCCACT
TTCTCCTCTATAAGTTTCAGCGCCTCTGGTTTTATGTGAAGTTCCTTGAT
CCACTTAGATTTGATCTTAGTACACGGAGATAAGTATGGATCGATTCGCA
TTCTTCTACTTGATAACAACCAGTTGTGCCCGCACCCATTGTTGACAAAT
TGTCCTTTGTTCCTTTTTTTTCCCTCCCCCCCTTCTTCCCCTTTCTTTTT
TTTCCCCTTCCTTTTTTTCCTTCCCTTTTTCCCCCTTCCTTTTTTTATTT
ATTTCCTTTTTTTTTCCCTCCCCTTTTTTTTTTTTTTTTTCCCCCCCCCC
TCCTCCTTTCATTTTCTTTTCCCCTCTTTTCCCTCTTTTTTTTTGCCCCT
TTTCTCTCCCTTTACCTTTCTTTTTTTCCTTCCCG
TTTTTTACATGAAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCTATGGGAAGTCCCCAGTTC
CCCTAGGGCCTGGGACCTTGAATTTAGTTTCTCTCTATGATTAAATGGAG
TCTGAAAATTAAATGGTAGTACTTAGAATAAGTTTCTTTTGCTTGTTGCC
AACAATGATACAATACTTTTCTTCTCTACAATGCACAGCCAGTCACAGAT
TGGCAGGCTTTGAGTAGAACCATTTAATTGATGTTTTTGGTCCACACAGA
TTAAAAAAAAAAAAAAAAAAACAATCACTAAAGGTGTAACATGCACCAAC
AGGTTTTCTGCTTTCTTGCAAAATATCATTGAAAAGTAAAGAATCAGGCT
AGAATAGGTTCCCATACTCTTGTGGGAACTTAGCAACAGTCTGTGCCAAC
TGTTTTTTCAATCCTCTCCCTGTCTGCTCTCTTTTTTCTGCATTTTCCTG
CCCCCCTTTCAGGCCGATTTTGCGCTTCTGATTGACACGTTATGTAATGG
ACAACAGTCTTAACATTTCCAGTATTTTTCTGTCCCTAATGTCATAATTC
AAGAGCCTGCCTGATATTTCCTGGCCTTTTACAGGCGCTTTTTATATGCA
ACCTTTTTGTTTTTGGACCCCTTTACCTTTTCCCATATTTGTTTCCTTTT
GAACCCTATTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_k01.g1 MSMg01no443_k01.g1 CHROMAT_FILE:
MSMg01no443_k01.g1 PHD_FILE: MSMg01no443_k01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:17 2005
         (245 letters)



>mm_chr16_49374563_49375207
          Length = 645

 Score =  460 bits (238), Expect = e-134
 Identities = 241/242 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctatgggaagtccccagttcccctagggcctgggaccttgaatttagtttctctctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctatgggaagtccccagttcccctagggcctgggaccttgaatttagtttctctctat 260

                                                                       
Query: 61  gattaaatggagtctgaaaattaaatggtagtacttagaataagtttcttttgcttgttg 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 gattaaatggagtctgaaaattaaatggtagtacttagaatacgtttcttttgcttgttg 320

                                                                       
Query: 121 ccaacaatgatacaatacttttcttctctacaatgcacagccagtcacagattggcaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaacaatgatacaatacttttcttctctacaatgcacagccagtcacagattggcaggc 380

                                                                       
Query: 181 tttgagtagaaccatttaattgatgtttttggtccacacagattaaaaaaaaaaaaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgagtagaaccatttaattgatgtttttggtccacacagattaaaaaaaaaaaaaaaa 440

             
Query: 241 aa 242
           ||
Sbjct: 441 aa 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)