BAC Information

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BAC

Clone NameMSMg01-444F05
Chromosome16 (Build37)
Map Location 29,313,435 - 29,313,934
singlet/doubletsinglet
Overlap geneAtp13a5
Upstream geneFgf12, 1600021P15Rik, EG666717, Hrasls
Downstream geneAtp13a4, Opa1, Gm1968, LOC100043102, 9030404E10Rik, Hes1, EG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444F05.T7 (MSMg01no444_f05.b1)MSMg01-444F05.TJ (MSMg01no444_f05.g1)
ACCAG533519AG533520
length763731
length of high quality
(start - end)		514 (31 - 544)524 (83 - 606)
definitionCHROMAT_FILE: MSMg01no444_f05.b1 PHD_FILE: MSMg01no444_f05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:12 2005CHROMAT_FILE: MSMg01no444_f05.g1 PHD_FILE: MSMg01no444_f05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCAGGATCCGCGGAATTC
TACAAAAATTTTACTCATAGTATGTGTTTTAAGACCTCATGCTCTTCTTC
AAGACATAGCCTCTTGCTTAGCTTGCCACAACATCCCTCCAGCTTCATTT
CATGGTCCAGCTTCTAGCCTTACTATGTTGTCTTCTGTCTGTGACATGTT
TGGGCGCCTTTTTCACTCTTGTGCTTTGACCTGGCCATCTCTAAGCTCAG
AGGTGGCCTCCAACCTGTGACAGGTGTGCACATGCTGATGCATGCGCACA
TCCCCACCAAGCACACATCTCCCAGTAGCACAGCCGTCTTACTCCCATAT
TCCTTACATCTTTGGCTAGATGCTAAAGCTCTCTAGAGCTAGGGATAGCC
ACTCCTGATGCTCTACAAGCACTGAGTACAACACTGGCTTTCGGAGGCAG
TTTGCTGGGGGAAAAAATGACCAAAGTGTTGATTAATTATTCAAACAAAA
TGAACTGAAACAGGGAACAATCAGCTAAGCCTACTGATCTACAGCCTGTC
CAAACTGANGCCAGAATCTAGGTATGGGAGGAGGGCTTGATGACAGATTC
ATTCCTGGTTCCTATAGGAGAGTGGTGTGGAACCCTGGTCTCCCCTGACA
ACGGCGGTTATTTTCCTCCATTTATTTCTCCCCCCCCTGCCCCTTTTCCA
AAATTCTGAATGGCGGGAAATAACCCTTCCTTATCCGGGATACCTGTATC
CCTGTACAGACAA

NNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTCAGCTCTGTGATCC
ATTATTGAATTGGGTTATTTGGTTTGGTAGTGTTTAATTTCTTGAGTTCT
TTATATATTTTGCATATTAACCTTCTGTCAAATGTAAGGTTGGTAAAGAT
CTTTCCCAGTCTGTAGATTGCTGCTTTTTCCGATTGACAGTGCCCTCTGC
CTTACAGAAACTTTTCAGTTTTTGAGGTTTCATTTATTAATTGTTGGTAT
TAGGGCCTGAGCTATTGGTGTTCTGTTAAACAAGTTAGGCCCTGTACCAA
TGCATTCAAGGCTATTCTCCACTTTATCTTCCATTAAACTTAATGTATCA
GGTTTTGTGTGAGGTCTTTGATCCACTTGGACTTGAGTTTTGTGCAGGGT
AATAGATATGGATGTATTTGCAGTGTTCTATATGCAGATATCTAGTTACA
CCAGCACCATTTGTTAAGGATGCTTTCTTTTTTCCACCGTATGGTTTTGG
CATCTTTGTCCAAAAAAAAAATAAAAAATTAAGTGTCTGCAGGTATATGA
GCTTATTTCTGGGTCTTCTATTTTATTCCATTGATCAACCTGTCTGTTTT
TATGCCTACACCATGCCTATTTACAGAATTGCGTTGCCATTTTGATGCGA
ACTGCCACGCATTTGTAGAATGGTTTTGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_f05.b1 MSMg01no444_f05.b1 CHROMAT_FILE:
MSMg01no444_f05.b1 PHD_FILE: MSMg01no444_f05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:12 2005
         (514 letters)



>mm_chr16_29313221_29314134
          Length = 914

 Score =  897 bits (464), Expect = 0.0
 Identities = 491/500 (98%)
 Strand = Plus / Plus

                                                                       
Query: 15  gaattctacaaaaattttactcatagtatgtgttttaagacctcatgctcttcttcaaga 74
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gaattctacaaaaattttactcatagtatgtgttttaagacctcatgctcttcttcaaga 274

                                                                       
Query: 75  catagcctcttgcttagcttgccacaacatccctccagcttcatttcatggtccagcttc 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 catagcctcttgcttagcttgccacaacatccctccagcttcatttcatggtccagcttc 334

                                                                       
Query: 135 tagccttactatgttgtcttctgtctgtgacatgtttgggcgcctttttcactcttgtgc 194
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 335 tagccttactatgttgtcttctgtctgtgacatgtttgggcacctttttcactcttgtgc 394

                                                                       
Query: 195 tttgacctggccatctctaagctcagaggtggcctccaacctgtgacaggtgtgcacatg 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 395 tttgacctggccatctctaagctcagaggtggcctccaacctgtgacaggtgtgcacctg 454

                                                                       
Query: 255 ctgatgcatgcgcacatccccaccaagcacacatctcccagtagcacagccgtcttactc 314
           ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 455 ctgatgcatgcacacatccccaccaagcacacatctcccagtagcacagccatcttactc 514

                                                                       
Query: 315 ccatattccttacatctttggctagatgctaaagctctctagagctagggatagccactc 374
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ccatattccttacgtctttggctagatgctaaagctctctagagctagggatagccactc 574

                                                                       
Query: 375 ctgatgctctacaagcactgagtacaacactggctttcggaggcagtttgctgggggaaa 434
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||
Sbjct: 575 ctgatgctctacaagcactgtgtacaacactggctttcggaggcagtttgctgggaaaaa 634

                                                                       
Query: 435 aaatgaccaaagtgttgattaattattcaaacaaaatgaactgaaacagggaacaatcag 494
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 aaatgaccaaagtgttgattaattattcaaacaaaatgaactgaaacagggaacaatcag 694

                               
Query: 495 ctaagcctactgatctacag 514
           ||||||| ||||||||||||
Sbjct: 695 ctaagcccactgatctacag 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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