BAC Information

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BAC

Clone NameMSMg01-444G15
Chromosome16 (Build37)
Map Location 49,922,998 - 49,923,236
singlet/doubletsinglet
Overlap genenone
Upstream gene2310047C04Rik, C330027C09Rik, Myh15, 1700026J12Rik, LOC386061, EG216818, LOC628903, Ift57, LOC667796, LOC100043767, Cd47
Downstream geneEG433024, LOC100043769, LOC628951, EG224180, EG667802, LOC100043404, Bbx, LOC100043414, Ccdc54, LOC672778, 5330426P16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444G15.T7 (MSMg01no444_g15.b1)MSMg01-444G15.TJ (MSMg01no444_g15.g1)
ACCAG533587AG533588
length1,080754
length of high quality
(start - end)
---242 (73 - 314)
definitionCHROMAT_FILE: MSMg01no444_g15.b1 PHD_FILE: MSMg01no444_g15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:18 2005CHROMAT_FILE: MSMg01no444_g15.g1 PHD_FILE: MSMg01no444_g15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACATTCTAACGTACGGGCCAGCATAAGAGGAAAGANGNTTGATTCCCGAG
GACAGCGGGANGGTGTAGATAGTTTTCCCCCTAAAAATTGAGTGCGCGAG
CTCTGGTGATACCTGCTCCACAAAACATACACACAGGCTTCTCCACATAC
TATCAACAAAATAACCACCGTTGTACATTGGGGATCCGAGATCACTACTC
TTATCATCCACAGCGTTGTAAACGCAGAACCAAGAAAGAATACGAGACGC
ACTAAGCCAGAGGTACGACCGAGCTACATAACCATCGCGAGTCGCATCTC
GGTTATTCGCACGCGTTGTCCTTTTATTCACTACACCAATACAGGAATTG
AAATAGTGAATAACATTACCCTGGCACATGCGTACGGACACGTACAGCGA
TAGCACCTGTATGCCTACCACTGTTACTGCGAACGTCATGGTATTCCCGT
TGGGGCTAAAATTGCTCCCTGTTGCCCCTTCCCGCCGCGTGCACTTTTTT
TACAAATAATTTCCCGACAATCGCACCTGTTTCACATTTTCCCGCTATCC
GTCCGCTGGCGGACCGCCTGAAAATGTTGTCATGACTTTAATAGTCCTGT
TGTACCCGCTCAACACCTGTCCTATATTTACCCTTGTCTTTATATATCGC
GACCACACCACCCCCCATTTTTGTGTGGAACAGCCACCCACTAAACCAAC
ATTTTTTGTTCCCACACCTTGTTTGTTGTCTTATTTGTTGGCCACTGTGT
TGATACGCTAATCCGCCGTTGAATTTCACATCCGTTTACATTTCCACTGT
GTTTTCCCACCTGTTTTTCCACCCGCGTGTTCGCGGGTGTATCCGTACAC
CTCTGTGGTCCGGTACACTTGTGGACTAACATCCGGAGCAGTCAGGGAAT
TTGGCTCTAACTATTCTTTTTCATACAGTGTGGGGCACTATATACCCTGT
GGGCTGCGTCGGCGGCATAATAGGTTACCCGCCCACCACATACTTAGCTG
GCCATNTATGCCCCTGAGATCACAACATGAGCGCCATATTGCGCCGGCGG
CGATAGTTACACGGCGCCCCCGCGAGCTCN
CATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTCGAGAAACTTCCTTTTTTTCTTTCTCTGGTTTTGTCTG
GAGCTTTCTCAGCATCACTCTACATTAGAGATCATGCATGGGTTTTTTTT
TGTTTGTTTGTTTTTTATCACAAATGCTTTGTCAAATCGCCTTATCATAA
TTCACTTTCCAGGTTGTTTTCTTCCTGTCCCTCTCATGAACTTCATTTTC
CAGGGTGATACCTGAGTTGATCCATGCTAACTGTAGTGGAGGGAAGGGAG
TAGGAGGCAGAANAAGTTGGTAGGGAAGCCATCTTTAGAAGACTCAAGGG
CACGATTTTATCAACCCCACCACCCAGAGGTGACTCCACTTAGCCTTAGA
GAGTCTTGCCAAACCACTCCATGTTCTTCGCCTCTTCTCACTTTTCAGGA
ATATTTCTCGGATCCATAAATAGACAGGTGAGACAGTGTTGTCAATGCTG
TACAATCCCATTTAGAAACATGGCATTATTCATAAATTAGTGCCACCCCT
TATTTCTTTGCTAATTGCCCCCCCTTTTTTTTCCGTCCCCCCTCATCTTC
ACATCACCTTTTTTCTACCCCTCGCTTTGCACATCTTTTCCGCCCTTTTT
TTTTTTTTTTCTCTCAACCTTCTCTCTCTTCCTTGTGCACCAAACCACTT
CCCTGTTTCCTCTTCTCTTCCTTGCCCCTTTCCCTCTTTTTTCCCCTTTT
CTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_g15.g1 MSMg01no444_g15.g1 CHROMAT_FILE:
MSMg01no444_g15.g1 PHD_FILE: MSMg01no444_g15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:18 2005
         (242 letters)



>mm_chr16_49922797_49923438
          Length = 642

 Score =  410 bits (212), Expect = e-119
 Identities = 233/244 (95%), Gaps = 10/244 (4%)
 Strand = Plus / Plus

                                                                       
Query: 2   ctttttttctttctctggttttgtctggagctttctcagcatcactc-tacattagagat 60
           ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 202 ctttttttctttctctggttttgtctggagctttctcagcatcac-cgtacattagagat 260

                                                                       
Query: 61  catgcatgggtttttttttgtttgtttgttttttatcacaaatgctttgtcaaatcgcct 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgcatgggtttttgtttgtttgtttgttttttatcacaaatgctttgtcaaatcgcct 320

                                                                       
Query: 121 tatcataattcactttccaggttgttttcttcctgtccctctcatgaacttcatttt--- 177
           |||||||||||||||||||||||||||||||||||||||||||||||||||||       
Sbjct: 321 tatcataattcactttccaggttgttttcttcctgtccctctcatgaacttca----gca 376

                                                                       
Query: 178 -ccagggtgatacctgagttgatccatgctaactgtagtggagggaagggagtaggaggc 236
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cccagggtgatacctgagttgatccatgctaactgtagtggagggaagggagtaggaggc 436

               
Query: 237 agaa 240
           ||||
Sbjct: 437 agaa 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)