Query= MSMg01no444_h19.b1 MSMg01no444_h19.b1 CHROMAT_FILE:
MSMg01no444_h19.b1 PHD_FILE: MSMg01no444_h19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:24 2005
(589 letters)
>mm_chr16_90436707_90437696
Length = 990
Score = 752 bits (389), Expect = 0.0
Identities = 410/417 (98%), Gaps = 1/417 (0%)
Strand = Plus / Minus
Query: 5 gaattctccaccactatggtaaaggggggaccaaagaagtgacaggcaaaaatatgccga 64
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gaattctacaccactagggtaaaggggggaccaaagaagtgacaggcaaaaatatgccga 373
Query: 65 tggcccctaaataaaaaaacattaaaagtcggttctgtggagttttcaaaagccacaact 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tggcccctaaataaaaaaacattaaaagtcggttctgtggagttttcaaaagccacaact 313
Query: 125 tcaataaa-gtcgcctgtgaatataggataaggaatattttaatggttgtctcaacaacc 183
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tcaataaaggtcgcctgtgaatataggataaggaatattttaatggttgtctcaacaacc 253
Query: 184 catcccccacgtccatgtagagtgacacattctaacatgacttccagaggcctgaggaaa 243
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 252 catcccccacgtccatgtagggtgacacattctaacatgacttccagaggcctgaggaaa 193
Query: 244 taacttagttactagcatgcttgctaacatgcatggagatctgagttcaggctcccaata 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 taacttagttactagcatgcttgctaacatgcatggagatctgagttcaggctcccaata 133
Query: 304 cccacataaaaaccaggcacagaggcgcctgtctgtaatcactgcagaaggagaaacaga 363
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 132 cccacataaaaaccaggcacagaggcgcgtgtctgtaatcactgcagaaggagaaacaga 73
Query: 364 aggctggacagtctaacctcagcagtaaattcaaggctgagtgagagactgactcaa 420
|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 72 aggctggacagtctaacctcagtagtaaattcaaggctgagtgagagactgcctcaa 16
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 990
Length adjustment: 10
Effective length of query: 579
Effective length of database: 980
Effective search space: 567420
Effective search space used: 567420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no444_h19.g1 MSMg01no444_h19.g1 CHROMAT_FILE:
MSMg01no444_h19.g1 PHD_FILE: MSMg01no444_h19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:24 2005
(593 letters)
>mm_chr16_90413556_90414548
Length = 993
Score = 1040 bits (538), Expect = 0.0
Identities = 580/594 (97%), Gaps = 4/594 (0%)
Strand = Plus / Plus
Query: 1 tgctaactgagcttgggtgatcagcgaagacgttctaatggcctaccggtgattgaggcc 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 tgctaactgagcttgggtgatcagcgaagacgttctaatggcctaacggtgattgaggcc 260
Query: 61 taacggttttgtcagagttctgatgacccatgaccgagtcctggtgtttggtgagtgatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taacggttttgtcagagttctgatgacccatgaccgagtcctggtgtttggtgagtgatg 320
Query: 121 accagtgatctaaagctagaggccagtacgtgaattctgatggttggtgaccgaggacca 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accagtgatctaaagctagaggccagtacgtgaattctgatggttggtgaccgaggaccg 380
Query: 181 atagtcagcggttgacttctgatgactgaagtcttagcttcttttcccgttgccgtgata 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 atagtcagcggttgacttctgatgactgaagtcttagcttcttttcccattgccgtgata 440
Query: 241 aaggactcctacaaaagcgacttaagggtgaagttccaggtcactcttcaaggttcggtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 aaggactcctacaaaagcgacttaagggtgaagttccaggtcactcttcaaggtttggtc 500
Query: 301 catcacgatggagaaagcaaggcagcggaggatgaagcagctgcttgtgttacatctaca 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 catcacgatggagaaagcaaggcagcagaggatgaagcagctgcttgtgttacatctaca 560
Query: 361 gtcaagctgtagagagtgatgaatgcccagtgcggcttaggccactttctctgtttattc 420
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 561 gtcaagctgtagagagtgatgaatgcccagggcggcttaggccactttctctgtttatac 620
Query: 421 ggaataggatcttgctagggaatgctaccgctcatagtgggcaattcaggtcatcgacat 480
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggaataggatcttgccagggaatgctaccgctcatagtgggcaattcaggtcatcgacat 680
Query: 481 aatcac-ctgcaggtgtgattccattcgaccatttgacaattaacccttactataatagt 539
|||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 681 aatcacac-gcaggtgtgattccattcgaccatttgacaattaacccttaccgtaatagt 739
Query: 540 ctgtgattttgttctgaggctgggtgnttgatttgctcccccataggacattga 593
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 740 ctgtgattttgt-ctgaggctgggtg-ttgatttgctcccccataggacattga 791
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space: 573089
Effective search space used: 573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
