BAC Information

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BAC

Clone NameMSMg01-445K10
Chromosome16 (Build37)
Map Location 20,476,192 - 20,476,616
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935, A930003A15Rik, Klhl6, LOC100042938, Klhl24, Yeats2, LOC100043459, Map6d1, Parl, EG224044, Abcc5
Downstream geneEif2b5, Dvl3, Ap2m1, LOC100042948, Abcf3, BC052055, EG328644, Alg3, 1810009K13Rik, Camk2n2, Ece2, Psmd2, LOC100043475, Eif4g1, 2900046G09Rik, Clcn2, Polr2h, Thpo, Chrd, LOC666255, LOC671504, EG666274, EG625060, LOC625123, LOC676915, 2310042E22Rik, Ephb3, 6430590I03Rik, Vps8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445K10.T7 (MSMg01no445_k10.b1)MSMg01-445K10.TJ (MSMg01no445_k10.g1)
ACCAG534532AG534533
length751746
length of high quality
(start - end)
68 (61 - 128)426 (70 - 495)
definitionCHROMAT_FILE: MSMg01no445_k10.b1 PHD_FILE: MSMg01no445_k10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:55 2005CHROMAT_FILE: MSMg01no445_k10.g1 PHD_FILE: MSMg01no445_k10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTGCGATAGAATCCGCGGAATTCCAGAT
TTACCATAAGACTTTATCTCTCTTCTCTTGCTAGAGAGAGATTTGCTTCA
GATCCCACATGCTATCATTCTTGGCAAGAATCCCAGGGTTCTTTCTTCAT
CGATTTAAGTAATAGGNTGCTCNATTCTGAAACAATGCAGCTTAACTCAG
GGTTGGTTCCACCGAGAGGCGGGGGCGGAGTAGAGGGGGGTCGGTGGGGG
GGGGGGCGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGCGTGGGGGGGGGG
GGGGGTCTGTTGGGGGGGCGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGG
GGAGGGGGCGGGAAAAATTTTCTTTTTTTTTTGAAAAANTCACTTTATAA
ACCCGGAATCTAATTTAAAAAAAAATGGGGTTTAAATCTCAAAAATCTCC
GTAGGGATCAAAAACTAAAANAATTTTTATAAAAAAAAAAAAAATAATTT
TTAAAANATATTATTTTGGTTTTTTTTAAATTTTTTAAAAAGGGGAGTTC
CATAAAAAAAAAATTTTTTATATTTTTTTTAAAATAAAATTATTNANAAA
AAAAAAAATTTTTTTTTTTTTCTTCCCCTCCCTTTATAACATTATCTTAT
TTTTCAAAACCCACCTATTAATACCCTTCCCCCCATTCCACCCACCACAC
CTATTTTTCTTTTTTAATCTCTTTTTATAATTGTTGGGCGGCGGGGGGGG
N
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTAGTGACCGTGAAAGGGTGTGCTGAGTCTTT
TAACACTAAATATCCTGAAGGGATTTTTTTTTTCCCTAGTATGAGGAATT
AAGTCTGGGACCTTGAGTATAAGGGTCCAAAATCGATGAAAGAAGACTCC
AGACTCAGAATGCAAAAAGAAAGACATTTAGGCCGGGCGTGGTGGTGCAT
GCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTC
GAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACA
GAGAAACCCTGTCTCAAAAAAACCAATAAAAAAATAAAAAAAAGAAAGAA
AGAAAGACGTTTAATCTGCAGAAACAACCAGTATGTTGTGGGAGTCAACC
ATTTTTTGAAATGGGGACCCCAGACAAAGGCGTGAAGACCTTCTTGTAGG
GAACTGGGGGAACTCTCTAGAAGGACTGGGTAATCTAAAACTCTCTCTGG
TGGGTGCTAGGGAGTCATATTGGGTCAGTGTTTCTGTATTTCTATGTTTG
GATCGGTTTTTCTTTTGCGGGCCTTGTGTGTGTTCACCTTTTTTTTCCCT
ATTTTTGGTTTTATTACCTCTTCCTACCTGACACATTTCCTCCCCCTCTT
TTTTTTTGATAAGTTGATTTTTTATTCTTACTGCCTTCACTGTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_k10.g1 MSMg01no445_k10.g1 CHROMAT_FILE:
MSMg01no445_k10.g1 PHD_FILE: MSMg01no445_k10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:56 2005
         (426 letters)



>mm_chr16_20475992_20476816
          Length = 825

 Score =  777 bits (402), Expect = 0.0
 Identities = 420/426 (98%), Gaps = 1/426 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagtgaccgtgaaagggtgtgctgagtcttttaacactaaatatcctgaagggatttttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagtgaccgtgaaagggtgtgctgagtcttttaacactaaatatcctgaagggatttttt 260

                                                                       
Query: 61  ttttccctagtatgaggaattaagtctgggaccttgagtataagggtccaaaatcgatga 120
           ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 ttt-ccctagtatgaggaattaagtctgggaccttgagtataagggtccaaaattgatga 319

                                                                       
Query: 121 aagaagactccagactcagaatgcaaaaagaaagacatttaggccgggcgtggtggtgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aagaagactccagactcagaatgcaaaaagaaagacatttaggccgggcgtggtggtgca 379

                                                                       
Query: 181 tgcctttaatcccagcacttgggaggcagaggcaggtggatttctgagttcgaggccagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgcctttaatcccagcacttgggaggcagaggcaggtggatttctgagttcgaggccagc 439

                                                                       
Query: 241 ctggtctacagagtgagttccaggacagccagggctacacagagaaaccctgtctcaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctggtctacagagtgagttccaggacagccagggctacacagagaaaccctgtctcaaaa 499

                                                                       
Query: 301 aaaccaataaaaaaataaaaaaaagaaagaaagaaagacgtttaatctgcagaaacaacc 360
           ||||||| ||||||| |||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 500 aaaccaaaaaaaaaaaaaaaaaaaaaaagaaagaaagacgtttaatctgtagaaacaacc 559

                                                                       
Query: 361 agtatgttgtgggagtcaaccattttttgaaatggggaccccagacaaaggcgtgaagac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agtatgttgtgggagtcaaccattttttgaaatggggaccccagacaaaggcgtgaagac 619

                 
Query: 421 cttctt 426
           ||||||
Sbjct: 620 cttctt 625


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 825
Length adjustment: 9
Effective length of query: 417
Effective length of database: 816
Effective search space:   340272
Effective search space used:   340272
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)