Query= MSMg01no445_l03.b1 MSMg01no445_l03.b1 CHROMAT_FILE:
MSMg01no445_l03.b1 PHD_FILE: MSMg01no445_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:59 2005
(483 letters)
>mm_chr16_24129899_24130781
Length = 883
Score = 851 bits (440), Expect = 0.0
Identities = 470/480 (97%), Gaps = 2/480 (0%)
Strand = Plus / Minus
Query: 5 gaattctcagggtattcacagtatgcacgaactcactcaaaggaaacccaaaccccctgt 64
|||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 683 gaattctcagggaattaacagtatgcacgaactcactcaaaggaaacccaaa-cccctgc 625
Query: 65 ctttcaactggagaagcacaactttctagacaagcaagtgatgtgggaaaaattgtttgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctttcaactggagaagcacaactttctagacaagcaagtgatgtgggaaaaattgtttgt 565
Query: 125 agccatcttcagagaaacaatccactacacagaggagagcctggagccctaagatgaaac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agccatcttcagagaaacaatccactacacagaggagagcctggagccctaagatgaaac 505
Query: 185 tttgggttgaaaccttgtgaaatgatcctag-tttttttttcttatcgaagatgttaatt 243
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 504 tttgggttgaaaccttgtgaaatgatcctagttttttttttcttatcaaagatgttaatt 445
Query: 244 ttctattactggactttcttggacccaccatataccaaataatgatccagagacttatta 303
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 444 ttctattactggactttcttggacccaccagacaccaaataatgatccagagacttatta 385
Query: 304 attatcaaagtctcatactgacagaggagatctcttgtgaggcgaagctgaaccaaacct 363
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 384 attatcaaagtctcatgctgacagaggagatctcttgtgaggcaaagctgaaccaaacct 325
Query: 364 cagcaatctcctcccatctaacaaaagagcaccgtgaagtggatggggtggcatatttga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagcaatctcctcccatctaacaaaagagcaccgtgaagtggatggggtggcatatttga 265
Query: 424 gaagtgcctaaactcctacctgagcaggtctgtcagctttgtgtgtctggaagctagcag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaagtgcctaaactcctacctgagcaggtctgtcagctttgtgtgtctggaagctagcag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space: 412929
Effective search space used: 412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no445_l03.g1 MSMg01no445_l03.g1 CHROMAT_FILE:
MSMg01no445_l03.g1 PHD_FILE: MSMg01no445_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:59 2005
(487 letters)
>mm_chr16_23981928_23982814
Length = 887
Score = 919 bits (475), Expect = 0.0
Identities = 484/487 (99%)
Strand = Plus / Plus
Query: 1 agtgtcttattttcctgaaaccgtggagactgggtaacagggcccaccccagagaaacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgtcttattttcctgaaaccgtggagactgggtaacagggcccaccccagagaaacct 260
Query: 61 ctgacacacagcagggttgcctcgccttcccagaaatgaactccgtgtggccacccccta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgacacacagcagggttgcctcgccttcccagaaatgaactccgtgtggccacccccta 320
Query: 121 agtgctctcggtagccttgcgcctttggggaggtctgcacaacctccacccagtcctaaa 180
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 agtgctctcggtagccttgtgcctttggggaggtctgcacaacctccatccagtcctaaa 380
Query: 181 agtaacgggtagcatcgttacactgcacatcccttcagtgatggaggcgggatcagattc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtaacgggtagcatcgttacactgcacatcccttcagtgatggaggcgggatcagattc 440
Query: 241 gcaccccagagacggggtctgtctggttccctgttttgtggtttccttttccttcggtat 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaacccagagacggggtctgtctggttccctgttttgtggtttccttttccttcggtat 500
Query: 301 gaattaacggtgacaaaggtaattttatatgggacaggaatgaatatcctaggagttacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaattaacggtgacaaaggtaattttatatgggacaggaatgaatatcctaggagttacc 560
Query: 361 attctcacttactggacttctgtctaacgctagagggagctctccatcaaggcttgaaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attctcacttactggacttctgtctaacgctagagggagctctccatcaaggcttgaaac 620
Query: 421 catagccggctgctcgccccgcccctccttcccattgacctagtttggccagggtctgga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catagccggctgctcgccccgcccctccttcccattgacctagtttggccagggtctgga 680
Query: 481 tttggag 487
|||||||
Sbjct: 681 tttggag 687
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
