BAC Information

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BAC

Clone NameMSMg01-448F10
Chromosome16 (Build37)
Map Location 41,141,839 - 41,142,137
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneEG667450, Lsamp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448F10.T7 (MSMg01no448_f10.b1)MSMg01-448F10.TJ (MSMg01no448_f10.g1)
ACCAG536577AG536578
length7671,034
length of high quality
(start - end)
305 (81 - 385)---
definitionCHROMAT_FILE: MSMg01no448_f10.b1 PHD_FILE: MSMg01no448_f10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:35 2005CHROMAT_FILE: MSMg01no448_f10.g1 PHD_FILE: MSMg01no448_f10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACCGGACGCAGGG
AATTCCATACATCGATCCCAATGACTAGGCAAAATATCTATACAAAAAAA
ATGACTAAGGCACTACGTAGTTCTTCACTTAAAAGGTACTCTCTGCAAGA
ACATGATGGAATCTTCAATATCCTGAAGGCTTCAGTCCCAGAAAGCATGA
CAAAAGATTAAGTCAAAAACATAATTGAAAGCAGTTCAGGATAGCAAGGG
AGGATTTCAGTCACGTGATTTTCTCTTGGTGGAAAAAACGGGGTACAAAC
CATCACAACAGTTGACAAATTTTCCTTTGAAGATATGTATATATATATAT
ATATATGTATATATGTATATCATATATTATATATATACAGATGATAGACC
CTATTGTGCTAGTCCACTCTGCCTCATTTAAAAAAATCAGCTATCCCTTT
CCTTATGCTTTCGATTACATGCTAATCCCTTTTATCCCCACAATTGTATC
TGTATAGTTTAAGCGCTTTCAGAACATTTCATTACATCGGCGCTTTTTTT
TCGTATTTCTTCTCTTTCTCTTTTTCAATATTCTCCCCCCCTTTTATTTT
TATTTTTTTCACCCATTTCGCCATTTATGCCTTTTTCCCACTTTTTCGTC
CTTTTTACTTCGCCTACCACATCGTTACCAATTTTCTTCTTTCAAATTTT
TACACCTTAATTCTAAACTTTCCTTCTGCTAATTTTAATTAACATACCCA
TCTGCTTATTTTATTTC
CGCTGTTCTCCGCTGAATGACGGCCCCAGGATTAAATTATCTCTTCTAAA
AGAAGGGNGGGCGCCTACAATTCACATTTCCCCGGGGATTGTTTTGCTNT
CCGACAAATAATGACCACGCCAGTTAAATAAGAGCTAACTAAGAAACTAA
ACGACGAGAACAGGCAGACCCGAAAACTAAGCAAGGATACCTGCGCGTGC
GCCGTATATGTCGATACATGCCATATAAATTATATCTTTACGCGTTAAGG
CGAAGAAGCACCAAAAAAGTTAAAACATAATCACNCCAAAACCAGCTCCG
CCTTTCGTTATCACTCTCTCCCCTGTTCTTTACATTCCACGCAAAGTTGT
AAGACCCATACCCGTTAGAGGGGGCGGAGAGGGATGACACAATATGTACG
TAAGGAGAGCGCCGATCACATTCAGGTAACATATACCGGCGACGCGGTGT
TGCGGTATGTAGTGGTGGGTCTCGATCGCGTGTCACACGCAGGTAATGGT
GGCATCAATGACACGCGGGTGAGGCCCGCTCGTATCTCCCTAAACGCGGT
ATGAGAACGACACTTAATTTTGCACACCCTATCTTTCACCATTAACTACC
TCTCCCACTCTCTTTTTTTCCCTCCTCTTTGCCCTTTTTAGTTTCCCCGC
GATTTTTAGTCTTATNCCCCTNTTCCCCCACTCTCCCTTCTCTTCCTTCC
TTTTTCCCCCACACTAAAACTGNCTTCTCGGTTATCTTTCACCCGGTTGC
ATTATTCTCTTTCCGCTACAAACACTGCCGTGAACGAAGAGAATATTAGG
ACGGGAGAATAGGGAGGCGACGCAATATATAGACCGTGCAAAAAGAGAGC
GAATATACCCCTAAAACATATATTTCTTCCCGACTTCAATATATTTCTAA
CAAAATACGTTGNCCCAATATAGCGGAAACATTGTGCGAACAAGCCCCCT
CCCAACTCTGCTTCATCACCTACTCTCTAATATCTCGCGGTCCGCTTAAT
ATGTCTCGACCCTCCTCACGAGATACCGAATCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_f10.b1 MSMg01no448_f10.b1 CHROMAT_FILE:
MSMg01no448_f10.b1 PHD_FILE: MSMg01no448_f10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:35 2005
         (305 letters)



>mm_chr16_41141642_41142346
          Length = 705

 Score =  495 bits (256), Expect = e-144
 Identities = 288/300 (96%), Gaps = 4/300 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaatatctatacaaaaaaaa---tgactaaggcactacgtagttcttcacttaaaaggt 57
           ||||| |||||||||||||||   |||||||||||||||||||||||| |||||||||||
Sbjct: 198 aaaatgtctatacaaaaaaaaaaatgactaaggcactacgtagttcttgacttaaaaggt 257

                                                                       
Query: 58  actctctgcaagaacatgatggaatcttcaatatcctgaaggcttcagtcccagaaagca 117
           || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 acgctctgcaagaacgtgatggaatcttcaatatcctgaaggcttcagtcccagaaagca 317

                                                                       
Query: 118 tgacaaaagattaagtcaaaaacataattgaaagcagttcaggatagcaagggaggattt 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tgacaaaagattaagtcaaaaacataattgaaagcagttcaggatagcaagggaggattt 377

                                                                       
Query: 178 cagtcacgtgattttctcttggtggaaaaaacggggtacaaaccatcacaacagttgaca 237
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cagtcacatgattttctcttggtggaaaaaacggggtacaaaccatcacaacagttgaca 437

                                                                       
Query: 238 aattttcctttgaagatatgtatatatatatatatatatgtatatatgtatatcatatat 297
           |||||||| |||||||||||||||||||||||||||||| ||||||| ||||| ||||||
Sbjct: 438 aattttccattgaagatatgtatatatatatatatatatatatatatatatat-atatat 496


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)