BAC Information

Click to search

BAC

Clone NameMSMg01-448H21
Chromosome16 (Build37)
Map Location 59,256,681 - 59,257,119
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043477, Dcbld2, St3gal6, LOC100043480, Gm813, E330017A01Rik, Cpox, LOC100043790, Gpr15, Cldnd1, Olfr172, Olfr173, Olfr174, Olfr178, Olfr180, Olfr1563-ps1, Olfr181, Olfr182-ps1, Olfr183, Olfr185-ps1, Olfr186, Olfr187, Olfr188-ps1, Olfr189-ps1, Olfr190, Olfr191, Olfr192, Olfr193, Olfr1540-ps1, Olfr194, Olfr195, Olfr196, Olfr197, Olfr198, Olfr199, Olfr200-ps1
Downstream geneOlfr201, Olfr202, Olfr203, Olfr204, Olfr205, GA_x5J8B7U0478-6-340, Olfr206, Olfr207, Gabrr3, LOC100043803, Mina, BC043118, LOC672884, Arl6, Epha6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448H21.T7 (MSMg01no448_h21.b1)MSMg01-448H21.TJ (MSMg01no448_h21.g1)
ACCAG536693AG536694
length758773
length of high quality
(start - end)
439 (81 - 519)392 (83 - 474)
definitionCHROMAT_FILE: MSMg01no448_h21.b1 PHD_FILE: MSMg01no448_h21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:47 2005CHROMAT_FILE: MSMg01no448_h21.g1 PHD_FILE: MSMg01no448_h21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGA
TCCGCGGAATTCATAAAGATTATCCAATTAGTTAATTCAGGACAAAATTC
TCATATAATTCTCAAAGTAAAGCATTTAACAAGTAATATAAAAAAGAGGC
CATGACTTTGAAAAAACAAGTTGGAGTACGTGGGAGGATTTAGAGAGTGG
AATGGGAAGAAAGAATTACTGTGATTATATTATAATCTGAAAAATAACAG
TTATAATAACATTATAGGTTTGTTCATGTAATGTTTCTTTCAGTATAATT
CATAGTTAAGGATTTTGAAACTCGTTCTTTCTTCCTGAACTTTCAGGAAA
AATAAACTGACGTCTCACAATTGGTTACTTATGGTGATTTTTAACTTTCA
AAGAGATAGCATCTACTTATATTTAAAAATTGCATAAGGCCTGTTTTTAT
ATTGTTTTCTCATAGTAAAATATTTTTATATTACTCAAGCATCAGTAGTA
TGACTCTATAAATAAGAAAGTTAGCACTTGCAGATATAACATACCCACGC
GTATACATACTTCCAAAAATATTTTTTCCCTTTTCAAAATCATTAACCAA
AACAGTAACCCACATTTTGTCAACCCCAGCCCTTTATGTTGACTGTAGCT
CGAAATAATCTCTTGTTTTGTTCCAGAAATTATTCTCTTCCCGGCTAGCT
TTCCCTGTCCCCCCTCATTCTACTGCATTTCGCACCGCTTTATTCTCCAA
ACAAAATA
AAAAAACCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGTGTGGTTTTGGTAGG
TGTTACTTGGCCTTTTTCCTTTGCTCTTTTAATATTATTCTTTGTTCTGT
ACATTTAATGTTCTGATATCATGTGGTAGGAGGATTTTCTTTTCAGGTCT
AATTGATTTGGTGTTCTGTAGGCTTCTTGTGTGTTTATAGGCATCTCTTT
AGGTTAGGAAATTTTTCTTCTATGATGTTATTGAAGATGTGTTCTAGGCT
GTTGAACTGGTAATCTTCTTCTTCTGTTCTTATTATTCTTTTTTACCTTC
TTTTTTATTAAATTGTTATATTTATTTATATTCCAAATGTTGTCTTCCTT
TTCCATCTCCCTCCCAGAGTTTTTCACCCTATCCTCCCTCCCCTTGACCT
CTGAGAGTGCCCCCCACCCACTAACCTACCCCTTTTACACACCACCTTTC
CTAGGATCCTCCTTCCCTGGGGTATCAAGTTTCCACAGGAATTATGACAT
TTTTCTCCCACTGAGGCCAAACAAATGAGTTCTTTGGGTACTATATTTGC
ACTGGGCCCAGGACCAACCCCCTTGTAGCTTTTTTGGCGTGGGGGAACCT
CTTCTGGGTGCTTTTTTCTCCTCCCCATTATCTGTTATATTTTTCGTATT
TTACTCTGGGGGTGTGTTTTTCCCTTTTCGCCCCCTCTTATATTTTTTCT
TTCCCCCCTTTTATTTTAGTGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_h21.b1 MSMg01no448_h21.b1 CHROMAT_FILE:
MSMg01no448_h21.b1 PHD_FILE: MSMg01no448_h21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:47 2005
         (439 letters)



>mm_chr16_59256314_59257152
          Length = 839

 Score =  826 bits (427), Expect = 0.0
 Identities = 436/439 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttaattcaggacaaaattctcatataattctcaaagtaaagcatttaacaagtaatata 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 806 gttaattcaggacaaaattctcatataattctcaaagtaaagcatttaacaattaatata 747

                                                                       
Query: 61  aaaaagaggccatgactttgaaaaaacaagttggagtacgtgggaggatttagagagtgg 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 746 aaaaagaggccatgactttgaaaaagcaagttggagtacgtgggaggatttagagagtgg 687

                                                                       
Query: 121 aatgggaagaaagaattactgtgattatattataatctgaaaaataacagttataataac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 aatgggaagaaagaattactgtgattatattataatctgaaaaataacagttataataac 627

                                                                       
Query: 181 attataggtttgttcatgtaatgtttctttcagtataattcatagttaaggattttgaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 attataggtttgttcatgtaatgtttctttcagtataattcatagttaaggattttgaaa 567

                                                                       
Query: 241 ctcgttctttcttcctgaactttcaggaaaaataaactgacgtctcacaattggttactt 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ctcgttcattcttcctgaactttcaggaaaaataaactgacgtctcacaattggttactt 507

                                                                       
Query: 301 atggtgatttttaactttcaaagagatagcatctacttatatttaaaaattgcataaggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 atggtgatttttaactttcaaagagatagcatctacttatatttaaaaattgcataaggc 447

                                                                       
Query: 361 ctgtttttatattgttttctcatagtaaaatatttttatattactcaagcatcagtagta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ctgtttttatattgttttctcatagtaaaatatttttatattactcaagcatcagtagta 387

                              
Query: 421 tgactctataaataagaaa 439
           |||||||||||||||||||
Sbjct: 386 tgactctataaataagaaa 368


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)