BAC Information

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BAC

Clone NameMSMg01-449I03
Chromosome16 (Build37)
Map Location 95,443,094 - 95,443,322
singlet/doubletsinglet
Overlap genenone
Upstream geneHlcs, LOC622832, LOC100040857, Dscr6, LOC545178, Pigp, Ttc3, Dscr3, Dyrk1a, Kcnj6, LOC666201
Downstream geneKcnj15, Erg, Ets2, LOC625548, LOC100040997, Dscr2, Brwd1, LOC100041318, Hmgn1, Wrb, 4921526F01Rik, Sh3bgr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449I03.T7 (MSMg01no449_i03.b1)MSMg01-449I03.TJ (MSMg01no449_i03.g1)
ACCAG537462AG537463
length730748
length of high quality
(start - end)
226 (83 - 308)244 (84 - 327)
definitionCHROMAT_FILE: MSMg01no449_i03.b1 PHD_FILE: MSMg01no449_i03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:09 2005CHROMAT_FILE: MSMg01no449_i03.g1 PHD_FILE: MSMg01no449_i03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCATTATAATTGCGGCGCTCAAAGANCACATAGTCATGACTGGCGGAA
TCTGNCTGNTTAACAAAAAGAGTAAGCTAAGNGGGAGCCTCCTGATATAG
ACACTGGAGGTTAACCCTTATTTGTTTACTTCCCTCCACTCTATATAACC
TTAATCGTCCCAAGCACACCCACCTGGAATCTCAGAAGTTTATGATATTC
AGAAGTAAGACTTTGCAGATGAATTTAGTTATGCATTTAGATGATTTTAC
ACTGGATTCTGATACAGTTGAAGTCTAATAAATGGTCCCTTAAAGAGTCA
AGAACGTATTGGGATGCTTTAGAAGTAGCCATATGAGGGGGGAGGGAAAC
GTCTGAGTGTGCGCCTAATGAGTGATCAGGGAACAGAAGAGTCCCCTGAA
GCCTTCAAAGGTTCCCTGCTCATGACAGAACCTTGTTATTTAGAGTTGCA
GCTTCCAGAATCAGAGGAGAATAAAGTTGCTGGAAGCCATCCAGTGTGTA
GTAATTTGGAGAGAGCGCCTCACAGAAACCAGTTAGACCGGTTTCAAAAC
CCAGAAGGGTTTCAGTCTCCGGGCCTTTAGAGCAGCTGACAGAAAGGAGA
AGTTGAAGTACTGACTGTAGAAAGAGTCTGTACTTTCCGAGTTAGCATTT
TTTTTTTTTATATCTCACAACCTGAACGAAAATCTTAAACATTTTTCGAA
AGTCTGGGGAGGGGTATTTCCTCAGGTTTG
CCCCNCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGACTA
GGGGTNGAACTATANAAGGTTACGAAAAATTCCTGTCTTTTACGTCCTAC
TAGCTAGATGCTTTGTGTCATTTTGTTAGACCGAACTTCAACTGAGAATA
TGTCACACTGGATTGACTTGTGGGCAAACCAGTGGGATATTTTCTTGACT
GATGATTGATGTGGGAGGGGGCTCACTGTGGGTGGTACCATCCTTGAGCT
TCTGGTCCTTATTGTTGTAAGAAAGCAGACTGAGCAAGCCAGAAGGAGCT
GTTCAGTAAGCAGCCCCCCTCCATGGTTTTTCTTTAGCTCCTGCCTCCAC
GTTTATGCCTTGTTTGAGTTTCTGCCCTGATTTCCTTTAATGATAAACAG
CAGTATGGAAGCATAAGCCAAACCCTTTCCTTCCCAAGTTGCTCTTGGTC
ATGGAGTTTTATCACAGCAGGTGAAAGCTTAACCAAGACAGTGAGGTACA
GAATATATTTATGCCGCCTATAAAGTCTTGGCATGGCAGACACTCACACC
TGTCTCTGTATTCAGTCCTAAATAATGGAAGTACCTAGTCCCATATGAAC
TGGTTGCTTTCTATGACCTGTAAATAGGTACTCCAGCTCGGCTCACTCCT
TCTCAAAATTTACCCCCCATATTTTTTTTGTTTTTGCCCCTCACAAACTT
TATTCTTACAGATATCCGTCCTCCTTTATCCTTCTAACTCTTCTTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_i03.b1 MSMg01no449_i03.b1 CHROMAT_FILE:
MSMg01no449_i03.b1 PHD_FILE: MSMg01no449_i03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:09 2005
         (226 letters)



>mm_chr16_95442894_95443522
          Length = 629

 Score =  319 bits (165), Expect = 8e-92
 Identities = 213/235 (90%), Gaps = 15/235 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggagcctcctgatatag-acactgga--ggtt--aacccttatttgtttacttccctcc 55
           |||||||||||||||||| ||||||||  || |  ||  ||||||||| |||||||||||
Sbjct: 429 gggagcctcctgatatagcacactggaggggatacaa--cttatttgtatacttccctcc 372

                                                                       
Query: 56  actctatataaccttaatcgtcccaagcacacccacctggaatctcagaagtttatgata 115
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 actctatataacctgaatcgtcccaagcacacccacctggaatctcagaagtttatgata 312

                                                                       
Query: 116 ttcagaagtaagactttgcagatgaatttagttatgcatttagatgatttt----acact 171
           |||||||||||||||||||||||||| |||||||  || ||||||||        |||||
Sbjct: 311 ttcagaagtaagactttgcagatgaaattagttacacagttagatga----gaacacact 256

                                                                  
Query: 172 ggattctgatacagttgaagtctaataaatggtcccttaaagagtcaagaacgta 226
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ggattctgatacagttgaagtctaataaatggtcccttaaagagtcaagaacgta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 629
Length adjustment: 9
Effective length of query: 217
Effective length of database: 620
Effective search space:   134540
Effective search space used:   134540
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)