BAC Information

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BAC

Clone NameMSMg01-449J10
Chromosome16 (Build37)
Map Location 88,510,116 - 88,510,604
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435486, ORF63, Bach1, LOC100039901, Grik1, EG622373, Cldn17
Downstream geneCldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449J10.T7 (MSMg01no449_j10.b1)MSMg01-449J10.TJ (MSMg01no449_j10.g1)
ACCAG537524AG537525
length751744
length of high quality
(start - end)
495 (56 - 550)234 (89 - 322)
definitionCHROMAT_FILE: MSMg01no449_j10.b1 PHD_FILE: MSMg01no449_j10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:15 2005CHROMAT_FILE: MSMg01no449_j10.g1 PHD_FILE: MSMg01no449_j10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTTTCCCTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTTTACTGTTTCTAAAAAGACTGATGGTCACCTTTAC
AGAAAGAACCAGGAAATAAACTACAGAAGGATTCATTGGTGATAATAGCT
AGGAAGTCTGGATTGTCACAGTATACTGGAGCATCAGTGATGTAAGGTAG
ATTCCAATGGATGCAAGACAAAAACGCAAGTGAATTAAAATATATGTGTT
CATAATGACCAGGAATGTTGGTTCAGAATTTGGATATCAATGATAAAGAT
ACAGACACAGATAGATTGAAGAAAGTTAATTTTCTTGAGTGAATTCAAGT
GGCTCCCAACACAACATAGATTATTGATTCAGAACTTCATTGGCTTTCAG
AGTTTAAAGGGAAACTCCTGTGTTTAAGGACACTGCACACTTACAGCAAA
GAATTTGGGTGATTTGAGCTGGATCTACTCTGACAACCTCCTTCTTTTGG
TTTAGCTTCCATGGTACCAGAAAATACTAAGAAACGTCTCAAGAGAGGAA
AAGTAATTAATAGCCCACAACACCTATGAACCACACCGATGACAAGTGTG
ACAAGATACACTAAAAGTTTTAATAAGTGGACTCACATATTAATAATAAC
CAATAAGTATCTAATGGATTTAAGGTCCACACAGGTAAGAGGGAAATCAT
GCCTGTTATTAAAAGCTTAACCCAACTTCTAGGGACCAAGGAAGAACTTG
G
ATTTTTCGATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTTCCGAAAATCAAGATATGGNGGCACAATAATG
GNAAAATCACTTGTGTGTATAATCTTCCCATACCTGCCTTGTACTAAGGC
TCACTTCAAAGAATGGAACCCCTACCTAATGCTCTTGGGGAGATGAAGAA
CCTGAGACCAGAGACATATGGGAATACCAAATACTACTCTTCTACTGAAG
GACTGTATTTTTAAAATGACACCTAATGATATTCTGCTATACACATATAG
ATTCATGTCTTGACCATCAATGGTTGATCANCTTCAGAGACACTTCCTAC
AGCAGATGAGAACTATTACAGACACCCACAGCCAGAAAATATGTCAAGAG
AGAGAGAGAGAGAGATCTTGCAACACTCATCTGTAAATGGGACGTCTCAA
TCCAATCCTTCCCTTCGGGGATCAGGGAACTCTGTGGAAAAGGAGGCTGG
ATAAGGGTGAGAGCCACAGGGGATGGGAGGGACTAGAGAATCGAAGCTTA
CTAGTTTAATCAGGACTGGAGCACACATGAACTTACAGAGATGGAGGCAG
CCTGCACAGGGTATGCACAGGTCTGCACCTGTGAAGAGATGGGGGAAAAT
GCTACCATCTCTAATCTTTATTTTGTCCTCAATTAACAAACACTTGCACA
GAAAAAACTAATTTTGACCCAGGGGAAGTCCCACTTAGGAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_j10.b1 MSMg01no449_j10.b1 CHROMAT_FILE:
MSMg01no449_j10.b1 PHD_FILE: MSMg01no449_j10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:15 2005
         (495 letters)



>mm_chr16_88510116_88511011
          Length = 896

 Score =  837 bits (433), Expect = 0.0
 Identities = 475/489 (97%), Gaps = 1/489 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattctttactgtttc-taaaaagactgatggtcacctttacagaaagaaccaggaaat 62
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gaattctttactgtttcataaaaagactgatggtcacctttacagaaagaaccaggaaat 430

                                                                       
Query: 63  aaactacagaaggattcattggtgataatagctaggaagtctggattgtcacagtatact 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aaactacagaaggattcattggtgataatagctaggaagtctggattgtcacagtatact 370

                                                                       
Query: 123 ggagcatcagtgatgtaaggtagattccaatggatgcaagacaaaaacgcaagtgaatta 182
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ggaacatcagtgatgtaaggtagattccaatggatgcaagacaaaaacgcaagtgaatta 310

                                                                       
Query: 183 aaatatatgtgttcataatgaccaggaatgttggttcagaatttggatatcaatgataaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 309 aaatatatgtgttcataatgaccaggaatgttggttcagaatttggagatcagtgataaa 250

                                                                       
Query: 243 gatacagacacagatagattgaagaaagttaattttcttgagtgaattcaagtggctccc 302
           |||||||||||||||||||| ||||||||||| |  |||||||||||||||||| |||||
Sbjct: 249 gatacagacacagatagattaaagaaagttaaatcacttgagtgaattcaagtgactccc 190

                                                                       
Query: 303 aacacaacatagattattgattcagaacttcattggctttcagagtttaaagggaaactc 362
           ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||
Sbjct: 189 aacacaacatagattattgattcagaacttcgttggctttcagagtttaaaaggaaattc 130

                                                                       
Query: 363 ctgtgtttaaggacactgcacacttacagcaaagaatttgggtgatttgagctggatcta 422
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 ctatgtttaaggacactgcacacttacagcaaagaatttgggtgatttgagctggatcta 70

                                                                       
Query: 423 ctctgacaacctccttcttttggtttagcttccatggtaccagaaaatactaagaaacgt 482
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 69  ctctgacaacctccttcttttggtttagcttccatggtaccagaaaatactatgaaacgt 10

                    
Query: 483 ctcaagaga 491
           |||||||||
Sbjct: 9   ctcaagaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 896
Length adjustment: 10
Effective length of query: 485
Effective length of database: 886
Effective search space:   429710
Effective search space used:   429710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)