BAC Information

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BAC

Clone NameMSMg01-450J08
Chromosome16 (Build37)
Map Location 14,469,772 - 14,469,983
singlet/doubletsinglet
Overlap geneAbcc1
Upstream geneParn, LOC100043196, 3110001I22Rik, Pla2g10, A930007A09Rik, LOC622757, Rrn3, Ntan1, Pdxdc1, Mpv17l, Ifitm7, 2900011O08Rik, 4921513D23Rik, Nde1, Myh11, 0610037P05Rik
Downstream geneGm1758, Snai2, Efcab1, LOC100042737, LOC665653, LOC385748, LOC100042743, LOC547302, EG632352
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450J08.T7 (MSMg01no450_j08.b1)MSMg01-450J08.TJ (MSMg01no450_j08.g1)
ACCAG538277AG538278
length744751
length of high quality
(start - end)
212 (366 - 577)238 (64 - 301)
definitionCHROMAT_FILE: MSMg01no450_j08.b1 PHD_FILE: MSMg01no450_j08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:34 2005CHROMAT_FILE: MSMg01no450_j08.g1 PHD_FILE: MSMg01no450_j08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCCTAAAATTTGGCGGCGAAAANGAATCACAATCGGATCGGTCCGNGG
AATCAGTAATACTAAAACCAGGAAACGAGGNCTTTCCTACCCAGTTCCTC
TTTCCTCTGCTATAACTCACCCATGATAACCCCTCAGATCCCAGCAAAGC
CCTTGAACATCTTTGATATGACCTGGGCACTGCAGTTACTGGCCAATGAC
TCACATTCCCAATCTTCAGTGACAGTTCTTTCTATATTTGACATTTTATA
TCTGAGATAGGCTCCCTCCCCCTCTAACAGTTATCCTAATCATGAATTCC
CATAACGCATATTTAATGCTTAGACTATCTCATGGGAATAGAATACTCTA
ATCCATGCTCATGCACAGTTTAACAAATCAACATGGATACGATACAAATG
GTTGGGGTGACCCCTGACCAAGTTTCTGAGAAAATTCTATGTGTCATAGC
CTGGAATGTCTTCCAGGAATAGCTTGGGACCATAAGAAGGTCCTAAAATC
CCAACAATTTCTTATGTCCCTATGTCCGCCCACCCTGGTGATGGTAACCT
CCCCTTACTACTCTAGAGTTTACGAACTGCAGTGCCTTAAAGGGATTATA
CAGGTCTGTGGACCACACAGGAGAAACTGTGATGAGCCGGATGTTTGTCT
GTATCACAACATGCTCTACCCGTTTTAATTGCCCTAGAACATGCCAGGGA
CCACTATACGAAACATCTTGCGAGCTCCAATTCTCCTTGCCCGG
CCATGACAGTGGTAGGCTGGGGCGCCGGTTCAGACTGGGGNGACCATAGA
AGTTACCAAAAATCTCTCTTTAGCTCTGCTCCCCATTTTTTATAGGGTAT
TTGGTTTTCTGGAGCCAATTTCTTGGTTCTTTGTATATATTGGATATTAA
CCTCTATCAGATGCGGGCTGGTAAAGATCTTTTCCCAATCTGTTGGTTGC
TGTTTTGTCCTATTGACAGTGTCCTTTGCCTTACGATTTTTGAATTTTAT
GAGGACCCATTTGTTGATTCTTGATCTTAGGGTGAAGTAGGGTTTTTTTT
TTTGCTTTGCTTCGTTTGCTTTCTTTTCCTTTTTTTTTTTTACCACCATT
CATACATGTAAGGTCTCTGTAGTTTTTTTTATATCCTTCTCACCCATTAT
TTTTTTCTTCTTTTTGTAGGATGTTTTTTCACCTTGTGTTTGTCTGTATT
TGAACTCTGTACCTCTCCCTTTTCTTCTTTTTCGTCTCCTACTTCTTGCC
GTTTCACTTTTCTTCCTTTGAGTTGTTCTTTTTTTCCTCTTCTTTTCTGC
TTATTCTTTCTATCGTTTTTAATCTCCTCTTTGTTACCTCTTTTTCCACT
TCTTCTTTTTTTTTTCTCCATTTACTCTTATTCTTCCAACTCTTTTTTTT
TTTTTTTCTCCATTTCCTTTTCTCCTTTGTTCTGCCTTTTCCTTTCCATT
TTCCTCCCCGCGCCCTTTCGGTCTTCTTACGTCCCTTCTGCTTCTATACT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_j08.b1 MSMg01no450_j08.b1 CHROMAT_FILE:
MSMg01no450_j08.b1 PHD_FILE: MSMg01no450_j08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:34 2005
         (212 letters)



>mm_chr16_14469572_14470183
          Length = 612

 Score =  379 bits (196), Expect = e-110
 Identities = 208/212 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtttaacaaatcaacatggatacgatacaaatggttggggtgacccctgaccaagttt 60
           |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 412 cagtttaacaaatcaacatggacacgatacaaatggttggggtgatccctgaccaagttt 353

                                                                       
Query: 61  ctgagaaaattctatgtgtcatagcctggaatgtcttccaggaatagcttgggaccataa 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 352 ctgagaaaattctatgtgtcatagtctggaatgtcttccaggaatagcttgggaccataa 293

                                                                       
Query: 121 gaaggtcctaaaatcccaacaatttcttatgtccctatgtccgcccaccctggtgatggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 292 gaaggtcctaaaatcccaacaatttcttatgtccctatgtccgcccaccctagtgatggt 233

                                           
Query: 181 aacctccccttactactctagagtttacgaac 212
           ||||||||||||||||||||||||||||||||
Sbjct: 232 aacctccccttactactctagagtttacgaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 612
Length adjustment: 9
Effective length of query: 203
Effective length of database: 603
Effective search space:   122409
Effective search space used:   122409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)