Query= MSMg01no451_l15.b1 MSMg01no451_l15.b1 CHROMAT_FILE:
MSMg01no451_l15.b1 PHD_FILE: MSMg01no451_l15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:05 2005
(708 letters)
>mm_chr16_4740052_4741159
Length = 1108
Score = 1263 bits (653), Expect = 0.0
Identities = 692/705 (98%), Gaps = 4/705 (0%)
Strand = Plus / Minus
Query: 5 gaattcctgtgtgtgccaggaatgtaaatggtacacatacatatatacatgcaaaacaca 64
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 gaattcctgtgcatgccaggaatgtaaatggtacacatacatatatacatgcaaaacaca 887
Query: 65 cataaaactaaaaaaaaa-aagaagaaatctaattttaattttaaaaanatatatatttt 123
|||||||||||||||||| |||||||||||||||||||| |||||||| | | |||||||
Sbjct: 886 cataaaactaaaaaaaaagaagaagaaatctaattttaa-tttaaaaa-a-aaatatttt 830
Query: 124 gttgtttggaaatggtaggataagaggagtgcggaaaagttctgtaagaccagcaactct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 gttgtttggaaatggtaggataagaggagtgcggaaaagttctgtaagaccagcaactct 770
Query: 184 acaggatgagactttcatcaactggcaccttctacatttcatctagtttctgcaaggcac 243
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 acagaatgagactttcatcaactggcaccttctacatttcatctagtttctgcaaggcac 710
Query: 244 tagtatacgcttcctaggggcttacagagtatgggattattccaagacttcctaacagtg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 tagtatacgcttcctaggggcttacagagtatgggattattccaagacttcctaacagtg 650
Query: 304 acattcctaaacaagataaagtaactccaatggctgctttatgttttatatagctttgaa 363
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 acattcctaaacaagatcaagtaactccaatggctgctttatgttttatatagctttgaa 590
Query: 364 tctatggtagtagagaataaagcacagcctttattcttttattatttgttcaagaacagc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 tctatggtagtagagaataaagcacagcctttattcttttattatttgttcaagaacagc 530
Query: 424 cttgaaggactgtcaggactgaactttcatcttgcactttttttcctaccttaatgagaa 483
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 529 cttgaaggactgtcaggactgaactttcatcttacactttttttcctaccttaatgagaa 470
Query: 484 ggcaccaggagtctctaggagtgggggtcttcaacagtgttctcattaaataagggttga 543
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 469 ggcaccaggagtctctaggagtgggggtcttcaactgtgttctcattaaataagggttga 410
Query: 544 tttacatacagacaactatgccccataggaagagccacacactggagtatagactcatca 603
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tttacatacagacaactatgtcccataggaagagccacacactggagtatagactcatca 350
Query: 604 agttttttctatgataaaaaacctttggggctggagagatggttcagcaattaagagcac 663
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 349 agttttttctatgataaaaaacctttggggctggagagatggttcagcaattaaaagcac 290
Query: 664 atactgttcttagtgagaaactgaattcaaacactctatgttggg 708
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 atactgttcttagtgagaaactgaattcaaacactctatgttggg 245
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1108
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1098
Effective search space: 766404
Effective search space used: 766404
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no451_l15.g1 MSMg01no451_l15.g1 CHROMAT_FILE:
MSMg01no451_l15.g1 PHD_FILE: MSMg01no451_l15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:05 2005
(677 letters)
>mm_chr16_4610469_4611545
Length = 1077
Score = 1210 bits (626), Expect = 0.0
Identities = 668/686 (97%), Gaps = 9/686 (1%)
Strand = Plus / Plus
Query: 1 tctcaattctacaaactaacaagtaaagatggtgagagagctgagctccctagaagattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 tctcaattctacaaactaacaagtaaagatggtgagagagctgagctccctagaagattc 251
Query: 61 caggggaaattcactccttgctcttgtagattctgtaatccttagcatttgttcccaggc 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 252 caggggaaattcactccttgctgttgtagattctgtaatccttagcatttgttcccaggc 311
Query: 121 tggtaactacatcccgtgtctctgcctgcatcttcagctggtccttccccctgtgtgtgt 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 312 tggtaactacatcccgtgtctctgcctgcatcttcagctggtccttctccctgtgtgtgt 371
Query: 181 atgtctgtgtccaggcctcgctcctctttgtcataaagacaggagaggatcaccttacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 atgtctgtgtccaggcctcgctcctctttgtcataaagacaggagaggatcaccttacag 431
Query: 241 aaggacctcaccttaccccatcatccaggacaaactgtttccaaacaagctcacatgtga 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aaggacctcaccttaccccatcatccaggacaaactgtttccaaacaagctcacatgtgg 491
Query: 301 acaccatgaatcagtacttctgtttgtcttttgggctgatttttttt--cacgccttttt 358
||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||
Sbjct: 492 acaccatgaatcagtacttctgtttgtcttttgggctgattttttttttcccgtcttttt 551
Query: 359 ggtttttggtttttttttttat-ttt------tttattttgttttgttttgttttttgag 411
|||||||| ||||||||||| | ||| ||||||||||||||||||||||||||||
Sbjct: 552 ggtttttgttttttttttttttgtttgtttgttttattttgttttgttttgttttttgag 611
Query: 412 gcagggtctctttacctagccctggaactttctgtagacttggctggccttaagatctac 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gcagggtctctttacctagccctggaactttctgtagacttggctggccttaagatctac 671
Query: 472 ctgcctttgcctttcaagtgctaggatttaaaggcatgtgacatgttgatagaatttaac 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ctgcctttgcctttcaagtgctaggatttaaaggcatgtgacatgttgatagaatttaac 731
Query: 532 actgtctacaggagggcaaaaatggggggtgtctgggtctgccgatggggtactaactca 591
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 732 actgtctacaggagggcaaaaatggggggtgtctgggtctgccgatggggcactaactcg 791
Query: 592 ctcctgtctttactccttaggatttccagccacttcgctatttggatggtgtccccagtt 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 ctcctgtctttactccttaggatttccagccacttcgctatttggatggtgtccccagtt 851
Query: 652 ccttccagttcttcttgcccctgggt 677
||||||||||||||||||||||||||
Sbjct: 852 ccttccagttcttcttgcccctgggt 877
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space: 711689
Effective search space used: 711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
