Query= MSMg01no451_m04.b1 MSMg01no451_m04.b1 CHROMAT_FILE:
MSMg01no451_m04.b1 PHD_FILE: MSMg01no451_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:07 2005
(676 letters)
>mm_chr16_87540175_87541250
Length = 1076
Score = 1203 bits (622), Expect = 0.0
Identities = 654/672 (97%), Gaps = 12/672 (1%)
Strand = Plus / Plus
Query: 5 gaattctctgattaatcagattttcaatcaaggctcagccttgtctcctaaaattgacaa 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctgaataatcagattttcaatcaaggctcagccttgtctcctaaaattgacaa 264
Query: 65 ctgtaaaaaatgttgtaaactaccccttttgaaaatctctctttcaaaagagaaaacaag 124
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 265 ctgtaaaaaatgttgtaaactaccccttttgaaaatctctcttccaaaagagaaaacaag 324
Query: 125 gctgagaaatgctaggcaacagtcaacatagctaggtgagtaagagacaaaaccggatga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gctgagaaatgctaggcaacagtcaacatagctaggtgagtaagagacaaaaccggatga 384
Query: 185 tagagtaacagaacggtgtgatgctatacacacagtgtcatatatggtgccattcatgat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagagtaacagaacggtgtgatgctatacacacagtgtcatatatggtgccattcatgat 444
Query: 245 gctgtccatggtgccatacatggcgccatacattatgttatacatgacatcatacatgat 304
||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 445 gctgtccatggtgccgtacatggcgccatacattatgttatacatgaca----------- 493
Query: 305 gtcatacatgatgccatacatgatgccatagtgacaccacatgtgatgtcatacatggtg 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 -tcatacatgatgccatacatgatgccatagtgacaccacatgtgatgtcatacatggtg 552
Query: 365 aaatacatgatataatacatgattacatacatgacaccatacatgacgctggacttctct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aaatacatgatataatacatgattacatacatgacaccatacatgacgctggacttctct 612
Query: 425 atactttacgttaatgattttttttcactcagtagtgcatagccaagacattcattcccc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 atactttacgttaatgattttttttcactcagtagtgcatagccaagacattcattcccc 672
Query: 485 accacatattctgtgtgatttttcatttgacatttgaagatgtcaagtatatttgaagta 544
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 673 accacatattccgtgtgattttccatttgacatttgaagatgtcaagtatatttgaagta 732
Query: 545 gtaattaaattgataagtttgactttggcattgttaagaatggaccaccatgaacaggaa 604
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 gtaatcaaattgataagtttgactttggcattgttaagaatggaccaccatgaacaggaa 792
Query: 605 atcacatcatcactctatcggcagcccctcatctggttgatcactacagttctctgtgtc 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 atcacatcatcactctatcggcagcccctcatctggttgatcactacagttctctgtgtc 852
Query: 665 atccatcctggt 676
||||||||||||
Sbjct: 853 atccatcctggt 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space: 709956
Effective search space used: 709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no451_m04.g1 MSMg01no451_m04.g1 CHROMAT_FILE:
MSMg01no451_m04.g1 PHD_FILE: MSMg01no451_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:08 2005
(591 letters)
>mm_chr16_87701121_87702111
Length = 991
Score = 975 bits (504), Expect = 0.0
Identities = 531/542 (97%), Gaps = 5/542 (0%)
Strand = Plus / Minus
Query: 54 aaagggggaacccttagtcgggcgtggtggcgcaagcctttaatcccagcactcaggagg 113
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 991 aaagggggaacccttagccgggcgtggtggcgcacgcctttaatcccagcactcaggagg 932
Query: 114 cagaggcaggtggatttctgagttcgaggccagcctggtctacaaagtgagttccaggac 173
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 cagaggcaggcggatttctgagttcgaggccagcctggtctacaaagtgagttccaggac 872
Query: 174 agccagggctatacagagaaaccctgtctc-aaaaaaaaaaaaaaaacaaaaacaaaaac 232
|||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||
Sbjct: 871 agccagggctatacagagaaaccctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaac 812
Query: 233 a----aaaacaaaaacaaaaaaaggggggacccacaaacttccaaagggtaagagaattt 288
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 aaaacaaaacaaaaacaaaaaaaggggggacccacaaacttccaaagggtaagagaattt 752
Query: 289 taccttaaattttaaaagattttgttatgaatattacattccaaatgtataaattatcaa 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 taccttaaattttaaaagattttgttatgaatattacattccaaatgtataaattatcaa 692
Query: 349 accttctaatcactacacacattcaaccaaccacctttggggcttgcctacaagtccaat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 691 accttctaatcactacacacattcaaccaaccacctttggggcttgcctacaaatccaat 632
Query: 409 aaaatgttatcaaaatagaactatgtaatttttttatttctatcactcactttaagaatg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 aaaatgttatcaaaatagaactatgtaatttttttatttctatcactcactttaagaatg 572
Query: 469 tagtaagaaattcccatcttttattctttacaatataaaaactacatatgaagtgaaagt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tagtaagaaattcccatcttttattctttacaatataaaaactacatatgaagtgaaagt 512
Query: 529 caaatactaagaatattttgaaattactacagctctcggaaaagatcagaaattaaacac 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 caaatactaagaatattttgaaattactacagctctcggaaaagatcagaaattaaacac 452
Query: 589 ac 590
||
Sbjct: 451 ac 450
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space: 569961
Effective search space used: 569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
