Query= MSMg01no451_o19.b1 MSMg01no451_o19.b1 CHROMAT_FILE:
MSMg01no451_o19.b1 PHD_FILE: MSMg01no451_o19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:20 2005
(577 letters)
>mm_chr16_30050864_30051843
Length = 980
Score = 1056 bits (546), Expect = 0.0
Identities = 571/580 (98%), Gaps = 3/580 (0%)
Strand = Plus / Plus
Query: 1 gggagtgctgccttccaggtgagcagctgaaggctgtcaggtgcgagaggagcaggaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggagtgctgccttccaggtgagcagctgaaggctgtcaggtgcgagaggagcaggaggc 260
Query: 61 atgacacagctgccctcacatcttcctcagtgctggcctcctcacacctgctctcccacc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 atgacacagctgccctcacatcttcctcagtgctggcctcctcacacctgctttcccacc 320
Query: 121 tgcctcccctcccaaggcatgctgggatatg--tttttttctcctgcttggttgattttg 178
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 321 tgcctcccctcccaaggcatgctgggatatgtttttttttctcctgctcggttgattttg 380
Query: 179 agggagtgacaacagccaacttggggagtctcaacaagttccccttcagggtacagaccc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agggagtgacaacagccaacttggggagtctcaacaagttccccttcagggtacagaccc 440
Query: 239 aagccagccaagcagggtgacagccactattccagttccactcaagtgtggcacctctac 298
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagccaaccaagcagggtgacagccactattccagttccactcaagtgtggcacctctac 500
Query: 299 atggtcagagccaagggcagcaatagaaaggacaccccacagctggctgcgctgattgtg 358
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 atggtcagagccaagggcagcaatagaaaggacaccccacagctggctgtgctgattgtg 560
Query: 359 accttcagagcagctcactgacaatccctgggtaggcatacgggagctaggactcagagg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 accttcagagcagctcactgacaatccctgggtaggcatacgggagctaggactcagagg 620
Query: 419 ttgcagactaagggcccactttccaggatatacgttttggtttattgaaaacttctaaaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgcagactaagggcccactttccaggatatacgttttggtttattgaaaacttctaaaa 680
Query: 479 atttaaaattttcattgcgctcatttgcaatgaaaccatctgacagttcatcccagtaaa 538
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 681 atttaaaattttcattgcgttcatttgcaatgaaaccatctgacagttcgtcccagtaaa 740
Query: 539 acacggtgtctcctcccc-acctgcccctgtccagggtac 577
|||||||||||||||||| |||||||||||||||||||||
Sbjct: 741 acacggtgtctcctcccccacctgcccctgtccagggtac 780
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 980
Length adjustment: 10
Effective length of query: 567
Effective length of database: 970
Effective search space: 549990
Effective search space used: 549990
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no451_o19.g1 MSMg01no451_o19.g1 CHROMAT_FILE:
MSMg01no451_o19.g1 PHD_FILE: MSMg01no451_o19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:20 2005
(664 letters)
>mm_chr16_30236694_30237757
Length = 1064
Score = 1069 bits (553), Expect = 0.0
Identities = 617/665 (92%), Gaps = 43/665 (6%)
Strand = Plus / Minus
Query: 1 gacagataattacgagcaggtgattgccgagagtctcagcactgagggtcagaagctgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 gacagataattacgagcaggtgattgccgagagtctcagcactgagggtcagaagctgac 774
Query: 61 aggtcctcccaacctctgcaccgagtcatcttgcacacctgcctgcctcccaccctctgc 120
|||||||||||| |||||||
Sbjct: 773 aggtcctcccaa-----------------------------------------cctctgc 755
Query: 121 tgccattttcctctttctctgcttgcttcttcggcccctcctatgacacagagcagagac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 tgccattttcctctttctctgcttgcttcttcggcccctcctatgacacagagcagagac 695
Query: 181 caggcagtagtagctcttgacagttggctacctgacttgtggaggagacagatcaaagcc 240
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 694 caggcagtagtatctcttgacagttggctgcctgacttgtggaggagacagatcaaagcc 635
Query: 241 cacaggggatgataggtcaccccggaacccaggttctggggcaacctttcatcctctggg 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 634 cacaggggatgataggtcaccccggaacccaggttctggggcatcctttcatcctctggg 575
Query: 301 tctcagtttctcccatccggcg-tgcaagataattggatgtgggacatcctatcctgccc 359
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 574 tctcagtttctcccatccgg-gatgcaagataattggatgtgggacatcctatcctgccc 516
Query: 360 tctgattcagcactcttggggagggtgagaaatctgctgtgtgaaatctgaccaaagagt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tctgattcagcactcttggggagggtgagaaatctgctgtgtgaaatctgaccaaagagt 456
Query: 420 gcttaaaataacacttctcagccttgatatcagaggattcgttcgtgtgtgccaaacaga 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gcttaaaataacacttctcagccttgatatcagaggattcgttcgtgtgtgccaaacaga 396
Query: 480 ttgtgattaagccggtggaaggtggcctttaagcctgaatttctagcgatctcccagtca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ttgtgattaagccggtggaaggtggcctttaagcctgaatttctagcgatctcccagtca 336
Query: 540 gtgctcaatcccttccagtcctgtttataccctgggaaatgaaaagctgactcacaagac 599
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gtgctcaatccctgccagtcctgtttataccctgggaaatgaaaagctgactcacaagac 276
Query: 600 ccaaccacagatccgtgggatcagaaactctggggtatcgaccagcaatctgtccttacg 659
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ccaaccacagatccatgggatcagaaactctggggtatcgaccagcaatctgtccttacg 216
Query: 660 ctgtc 664
|||||
Sbjct: 215 ctgtc 211
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
