Query= MSMg01no452_d07.b1 MSMg01no452_d07.b1 CHROMAT_FILE:
MSMg01no452_d07.b1 PHD_FILE: MSMg01no452_d07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:42 2005
(686 letters)
>mm_chr16_95456860_95457949
Length = 1090
Score = 957 bits (495), Expect = 0.0
Identities = 545/564 (96%), Gaps = 6/564 (1%)
Strand = Plus / Minus
Query: 128 ttctatctgcctccaccgtggggatcagatgtaagatctgctgcagcagcaccatgatct 187
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1090 ttctatctgcctccaccttggggatcagatgtaagatctgctgcagcagcgccatgatct 1031
Query: 188 -cttgcttcagcaccatgcctgcaccatgactacctccacactacgatggacgtgagctc 246
| |||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 1030 ac-tgctccagcaccatgcctgcaccatgactacctccatactacgatgggcgtgagctc 972
Query: 247 atactttgaaactgcaagcgaggccccaatttagtgttctcttctatgtttttttggcca 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971 atactttgaaactgcaagcgaggccccaatttagtgttctcttctatgtttttttggcca 912
Query: 307 gtggtgtctctttacagcaatgtatcaggaataatacactctcctcatcccaaaacactg 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911 gtggtgtctctttacagcaatgtatcaggaataatacactctcctcatcccaaaacactg 852
Query: 367 cttgcatgcttcttcagatatcaagcttatttcattcagacacttgaaggcaaagatagc 426
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 cttgcatgcttctaaagatatcaagcttatttcattcagacacttgaaggcaaagatagc 792
Query: 427 tgcaaacgttgagtatatgacagaatactatccactgtctatctccttggtggaagtcag 486
|||||| || |||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 791 tgcaaatgtagagtatatgacagaatactatccactgtctatctccttggaggaagttag 732
Query: 487 tatttttcctagggtgtgaactactcatgaccataaggcatgcgaacacctgagaccagg 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 tatttttcctagggtgtgaactactcatgaccataaggcatgcgaacacctgagaccagg 672
Query: 547 ccttagggaacgctccatatcatggaggcagtcactgaatacttcagcgctaaattcatt 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ccttagggaacgctccatatcatggaggcagtcactgaatacttcagcgctaaattcatt 612
Query: 607 ttatga----taaaaaaaaaagctgcttanactataagtattcctgtttttgtaactgga 662
|||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 611 ttatgattttttaaaaaaaaagctgcttaaactataagtattcctgtttttgtaactgga 552
Query: 663 tgtgttcttagtgtttaaagccag 686
||||||||||||||||||||||||
Sbjct: 551 tgtgttcttagtgtttaaagccag 528
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1090
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1080
Effective search space: 730080
Effective search space used: 730080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no452_d07.g1 MSMg01no452_d07.g1 CHROMAT_FILE:
MSMg01no452_d07.g1 PHD_FILE: MSMg01no452_d07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:42 2005
(593 letters)
>mm_chr16_95239301_95240294
Length = 994
Score = 1102 bits (570), Expect = 0.0
Identities = 588/594 (98%), Gaps = 1/594 (0%)
Strand = Plus / Plus
Query: 1 taagaggctacggttgcactttctagggcccaacccccaatgtgaaaacacatagccttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagaggctacggttgcactttctagggcccaacccccaatgtgaaaacacatagccttg 260
Query: 61 gcacgtctctgtacactcccaggctcacactttgtgtgtttattacagactccttgctga 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtacgtctctgtacactcccaggctcacactttgtgtgtttattacagactccttgctga 320
Query: 121 ctcctgccttacagaatgcaaacagacttgactagacttcgtcttgcagcgaatggaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcctgccttacagaatgcaaacagacttgactagacttcgtcttgcagcgaatggaaac 380
Query: 181 tcaagggcttaagaaaacacccgctaatgctggggggaaaaatggctgatttagaataca 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaagggcttaagaaaacacctgctaatgctggggggaaaaatggctgatttagaataca 440
Query: 241 aatggcatttatttcatgtgctgtactataccaccacgatccatgaggaaacctttaaat 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 aatggcatttatttcatgtgctgtactataccaccacgatccacgaggaaacctttaaat 500
Query: 301 tatgtttattgtctttttttttt-cttagagagaaataaaccgtgcagcatatttggata 359
||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||
Sbjct: 501 tatgtttattgtctttttttttttcttagagagaaacaaaccgcgcagcatatttggata 560
Query: 360 gtttttcattacaatagttggttgtgcagatccattttaatactgaagagaagatcgatt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtttttcattacaatagttggttgtgcagatccattttaatactgaagagaagatcgatt 620
Query: 420 accagtaataacttgcatgtctcaaagtggccgatcaagctgggtggccatgctacttcg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 accagtaataacttgcatgtctcaaagtggccgatcaagctgggtggccatgctacttcg 680
Query: 480 gcagattctgcccctcctaatgtggcccgtgttttcccctcacatctgccaacactccat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcagattctgcccctcctaatgtggcccgtgttttcccctcacatctgccaacactccat 740
Query: 540 cgattctggggaaccttttttttggtaagtagtgggtgttttagggtgttctga 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cgattctggggaaccttttttttggtaagtagtgggtgttttagggtgttctga 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 994
Length adjustment: 10
Effective length of query: 583
Effective length of database: 984
Effective search space: 573672
Effective search space used: 573672
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
