BAC Information

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BAC

Clone NameMSMg01-453F22
Chromosome16 (Build37)
Map Location 90,073,476 - 90,228,218
singlet/doubletdoublet
Overlap geneLOC100040496, LOC640694, LOC100040440, Sod1
Upstream geneLOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik, Tiam1
Downstream geneSfrs15, LOC545175, Hunk, 2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453F22.T7 (MSMg01no453_f22.b1)MSMg01-453F22.TJ (MSMg01no453_f22.g1)
ACCAG540399AG540400
length798804
length of high quality
(start - end)		631 (39 - 669)547 (74 - 620)
definitionCHROMAT_FILE: MSMg01no453_f22.b1 PHD_FILE: MSMg01no453_f22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:13 2005CHROMAT_FILE: MSMg01no453_f22.g1 PHD_FILE: MSMg01no453_f22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,073,476 - 90,074,097)(90,227,770 - 90,228,218)
sequence
CCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAGAGGATCCGCGGAA
TTCTTCTCTGTGTTGGAATGGACAGGGGCCTGCACCTGCACAGCAAGATA
CTGCAGCATGCATAGCCTGGGGAAGACCAATTTGGGTTGAATGAGCGGCC
AATGTCAGTCACTTCATGGGACTGACTCTTTAGTAAACTGCAGTCACTAA
CAACAGTTCGTTGAGATGTCCACACTTATAAATACCCAGACACTTCACTT
GCTCTCTTCCTTTCCCGAGAGAACAAGTGTCCAGATGAGCAGCCCACTAA
GTGCTGTGGTTTCAAAGCTACTACAGACTTAATCAGTGCAAGGAAGGGCA
CAGAAGCCTATTTCAGCCCCCAGTACAGTTGTCCTTTAATTGCTACCACA
AGGTCAAGTCTGCAATTGCAATGAATTCGCTCGGAACAGCCCCAAACCGC
GGAGGCAGCAGAGTGCCAGCGCTTGCTGGTGGTCAGGGCATGAATGTTGC
AAGGCTGCTACGCATTTTTAAACTCGATTGTACATAATTGTTAATCACTG
ACCCATCTCCAACCTCCTGGGCTGGAACATGTTGCTAAGCAACCCATTTT
GCTCTAGATACTTCCTGAAAGCAAGCCCAACAGCAACCAAGAGTCAGCTA
AGTAAACACTAACTATTAGTGACAGGTTCAAATAATGAAAGATGCCCAGC
ATCCTTAAGGCTTATTTATTTCATATGCCGTCCTAATGCAAACGTGTAAT
TCCCCATGTCTTACAACTGAAGCCATAAAGCATCTTAAGTTGGATTGG

AATGCTGTGGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAAAGCTATACACAGAGA
AACCCTGTCCTGAAAAACCAAAAAGAAAGGTGGTGGTGGTGGGTGTTGTC
TAGAGTCGAGGACTTAAATGTTAGGTATTTATTTACAGCAGTGGTTCTCA
ACCTTCCTAATACTGTGATCTTCTAAAGTTACTGATCCCCAACCATGAAA
TTATTTTTGTTGCTATTTTATAATTTTGGCTACTGTTATGAATTGTAATA
TAAATATCTGATTGGCAGAATAGATGATATACAACCCCAAAGGGGTCACG
ACCCACAGGTTGAGAACCTCTTACAGTTAAAGTTCTTTTCATCAAATTAC
ATTAGAAGACAAGATAACCTAGCCAGTAGACACTTTCTGCCAACCCTGAT
GGCCTATTTGACCCCAGGGACAATAAAAGGTGAAAGAATATGAACTTGTT
TTCCTCTTAGTGCACACACCCTAAAAATGATTTTTAAAACTACAAGGTGC
TAGGTTAAACAAAAAACTTGTCAAACTTAGCTTTATCGTACCTAGAAGTT
CCTTTTTGTATGTTCCCATTTGACATTTAGATCTGAGCTCTTCCTAATGA
TGGAAGAAATGTGTCTGTTGCTTTGCCAGGCTTCAGCTTTTCTGTGACCC
TACTTANGCTTTTAAGTCCTTATTAGAGTATCATAAAAAATGCCTCCGAC
GATGGATCAATGTCGAATTCCAGGACAGACTTGCAGCTTGTCTTTCAACT
AAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_f22.b1 MSMg01no453_f22.b1 CHROMAT_FILE:
MSMg01no453_f22.b1 PHD_FILE: MSMg01no453_f22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:13 2005
         (631 letters)



>mm_chr16_90073267_90074297
          Length = 1031

 Score = 1149 bits (594), Expect = 0.0
 Identities = 615/622 (98%)
 Strand = Plus / Plus

                                                                       
Query: 10  gaattcttctctgtgttggaatggacaggggcctgcacctgcacagcaagatactgcagc 69
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gaattcttctctgtgttggaatggacaggggcctgcacctgcacagcaagatactgcagc 269

                                                                       
Query: 70  atgcatagcctggggaagaccaatttgggttgaatgagcggccaatgtcagtcacttcat 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 270 atgcatagcctggggaagaccaatttgggttgaatgagcggccaatgtcagtcacttcac 329

                                                                       
Query: 130 gggactgactctttagtaaactgcagtcactaacaacagttcgttgagatgtccacactt 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 330 gggactgactctttagtaaactgcagtcactaacaacagttcgttgagatgcccacactt 389

                                                                       
Query: 190 ataaatacccagacacttcacttgctctcttcctttcccgagagaacaagtgtccagatg 249
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 390 ataaatacccagacacttcacttgctctcttcctttccagagagaacaagtgtccagacg 449

                                                                       
Query: 250 agcagcccactaagtgctgtggtttcaaagctactacagacttaatcagtgcaaggaagg 309
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 450 agcagcccactaagtgctgtggtttcaaggctactacagacttaatcagtgcaaggaagg 509

                                                                       
Query: 310 gcacagaagcctatttcagcccccagtacagttgtcctttaattgctaccacaaggtcaa 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gcacagaagcctatttcagcccccagtacagttgtcctttaattgctaccacaaggtcaa 569

                                                                       
Query: 370 gtctgcaattgcaatgaattcgctcggaacagccccaaaccgcggaggcagcagagtgcc 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gtctgcaattgcaatgaattcgctcggaacagccccaaaccgcggaggcagcagagtgcc 629

                                                                       
Query: 430 agcgcttgctggtggtcagggcatgaatgttgcaaggctgctacgcatttttaaactcga 489
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 agcgcttgctggtggtcagggcatgaatgttgcaaggctgctacgcatttttaaactcga 689

                                                                       
Query: 490 ttgtacataattgttaatcactgacccatctccaacctcctgggctggaacatgttgcta 549
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 ttgtacataattgttaatcactgacccatctccaacctcctgggctggaacatgttgcta 749

                                                                       
Query: 550 agcaacccattttgctctagatacttcctgaaagcaagcccaacagcaaccaagagtcag 609
            |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 ggcaacctattttgctctagatacttcctgaaagcaagcccaacagcaaccaagagtcag 809

                                 
Query: 610 ctaagtaaacactaactattag 631
           ||||||||||||||||||||||
Sbjct: 810 ctaagtaaacactaactattag 831


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no453_f22.g1 MSMg01no453_f22.g1 CHROMAT_FILE:
MSMg01no453_f22.g1 PHD_FILE: MSMg01no453_f22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:14 2005
         (547 letters)



>mm_chr16_90227272_90228218
          Length = 947

 Score =  837 bits (433), Expect = 0.0
 Identities = 445/449 (99%)
 Strand = Plus / Minus

                                                                       
Query: 99  taggtatttatttacagcagtggttctcaaccttcctaatactgtgatcttctaaagtta 158
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947 taggtatttatttacagcagtggttctcaaccttcctaatactgtgatcttctaaagtta 888

                                                                       
Query: 159 ctgatccccaaccatgaaattatttttgttgctattttataattttggctactgttatga 218
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 ctgatccccaaccacgaaattatttttgttgctattttataattttggctactgttatga 828

                                                                       
Query: 219 attgtaatataaatatctgattggcagaatagatgatatacaaccccaaaggggtcacga 278
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 827 attgtaatataaatatctgattggaagaatagatgatatacaaccccaaaggggtcacga 768

                                                                       
Query: 279 cccacaggttgagaacctcttacagttaaagttcttttcatcaaattacattagaagaca 338
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 767 cccacaggttgagaacctcttacagtcaaagttcttttcatcaaattacattagaagaca 708

                                                                       
Query: 339 agataacctagccagtagacactttctgccaaccctgatggcctatttgaccccagggac 398
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 agataacctagccagtagacactttctgccaaccctgatggcctatttgaccccagggac 648

                                                                       
Query: 399 aataaaaggtgaaagaatatgaacttgttttcctcttagtgcacacaccctaaaaatgat 458
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 aataaaaggtggaagaatatgaacttgttttcctcttagtgcacacaccctaaaaatgat 588

                                                                       
Query: 459 ttttaaaactacaaggtgctaggttaaacaaaaaacttgtcaaacttagctttatcgtac 518
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ttttaaaactacaaggtgctaggttaaacaaaaaacttgtcaaacttagctttatcgtac 528

                                        
Query: 519 ctagaagttcctttttgtatgttcccatt 547
           |||||||||||||||||||||||||||||
Sbjct: 527 ctagaagttcctttttgtatgttcccatt 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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