BAC Information

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BAC

Clone NameMSMg01-453L18
Chromosome16 (Build37)
Map Location 21,081,891 - 21,082,433
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042938, Klhl24, Yeats2, LOC100043459, Map6d1, Parl, EG224044, Abcc5, Eif2b5, Dvl3, Ap2m1, LOC100042948, Abcf3, BC052055, EG328644, Alg3, 1810009K13Rik, Camk2n2, Ece2, Psmd2, LOC100043475, Eif4g1, 2900046G09Rik, Clcn2, Polr2h, Thpo, Chrd, LOC666255, LOC671504, EG666274, EG625060, LOC625123, LOC676915
Downstream gene2310042E22Rik, Ephb3, 6430590I03Rik, Vps8, 2510009E07Rik, Ehhadh, LOC100043489, LOC546659, Map3k13, LOC624037, Tmem41a, Liph, Senp2, EG239760, Igf2bp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453L18.T7 (MSMg01no453_l18.b1)MSMg01-453L18.TJ (MSMg01no453_l18.g1)
ACCAG540677AG540678
length769772
length of high quality
(start - end)		650 (49 - 698)136 (81 - 216)
definitionCHROMAT_FILE: MSMg01no453_l18.b1 PHD_FILE: MSMg01no453_l18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:42 2005CHROMAT_FILE: MSMg01no453_l18.g1 PHD_FILE: MSMg01no453_l18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:42 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NAACCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACTGTGTATCCCAGGCTGGTCTGGAACTAGGCAATCCTGCTG
AGTCACCTTCCAAAGTGCTGAGACTGGTCCTGAGCCACTGTTGTAGTCTG
TAGGCCTCTTAGTTGCTAATTAAGGAATTGTTAGGGGCTGAGGAGATGAT
GGCTCAGCGAGGCTGGTAAGAGTACTGACTGTTCTTCTGACTGTTCAAAT
CCCCGCAACCACATGGTGGCTCACAACCCTCTGTAACAAGATCTGACTCC
CTCTTCTACAGTGTACTTACATATAATAAATAAATAAATAATAAAGTAAA
GAGAAAAGAAAAGAAAAGAAAAGGAGAGAAAAGAAAAGAAAAGAAAAGAA
AAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAA
AAGAAAAGAAAAGAAAAGAAAAGAAAAGCCTCCCACTCTGCGTTTCCTTC
CTTCCAGGCTCCTATTCTTATTTCACATGTCTGTGATCGTTCCATGTATA
CATATTTATATTCTATTCCTCTCACCATTAAGTTCACATGTATAATTTAA
GAGTCTTTGAAAGAAAATAAGATTTTGTATCTTGTGATTCATGTAAAAGA
GTTGTCTATAAGCCTCCGGCCTGGGGCCAAAAACAAAGCACCTAANAAGA
TAGAGACTTCACCTACTTATCACTGCTCTGACATTCTGGCAAAAGAACTG
ATACTCAAATGATCTGAAG

CACCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTATCTGGAATGAGTAGAG
TGCATTTCTTCTCCATAGAAAATGTTTCTGTTGCACAACCTAATTGGTGC
CTGAACAGGGACAGGACAGAACCAGAGAAGAGATGAAGAGGCGGGGGGGG
GGGGGGGGGGACGACNACNACNACGACNACACACGACTGANAAGCCCGAT
GAGGTGGGGTCCACCCTGTGAGTACAGAGGTGCCCTGAAAACAGTTAAAG
GGTTGGAGAAGATCTTGCTGTCTCTAAGTCTGGCGCACATGGAGGAGATC
ATGAACAAACAGCAGCAGAGGTTGCCTGGCCACTGTTGTGTGTAGTTAGA
AACGCATCTGATACCCATCCAGTCCCCGGCAGCTGTGGTGATGGTGGTGG
TGCATGTCTTTCATCCCAGTGCTCAGGAGGCATAGGCATATGCTTAGGCA
TAGGCACAGGTTTAGGCATTAGGCAGTAGCTTACGTTAAGGCTTAGGCAG
AGGCACAGGCCTATGCCTAGGCTTCATGCCTATGCTTACGCTTACGCTTA
AGCATATTTTCATGTCTATCCCACATTTTATTCCTAGGCACAGTCTGTTT
ACTTGNCCCCTTTTGCTCTCTCTTTGTCTCTTGTAGCGATTTCTATAATT
GTCTTTAACCCTGCCCCCCCTTTTTTCTTACTTTCTTTTCCTCTTTCTCG
ATCCTCTTATCTATGTTACTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_l18.b1 MSMg01no453_l18.b1 CHROMAT_FILE:
MSMg01no453_l18.b1 PHD_FILE: MSMg01no453_l18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:42 2005
         (650 letters)



>mm_chr16_21081587_21082636
          Length = 1050

 Score =  764 bits (395), Expect = 0.0
 Identities = 533/645 (82%), Gaps = 103/645 (15%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactgtgtatcccaggctggtctggaactaggcaatcctgctgagtcaccttcc 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ggaattcactgtgtagcccaggctggtctggaactaggcaatcctgctgagtcaccttcc 364

                                                                       
Query: 64  aaagtgctgagactggtcctgagccactgttgtagtctgtaggcctcttagttgctaatt 123
           ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 365 aaagtgctgagactggtcctgagccactgctgtagtctgtaggcctcttagtagctaatt 424

                                                                       
Query: 124 aaggaattgttaggggctgaggagatgatggctcagcgaggctgg-taagagtactgact 182
           ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 425 aaggaattgttaggggctgaggagatgatggctcagcgagg-tgggtaagagtactgact 483

                                                                       
Query: 183 gttcttctgactgttcaaatccccgcaaccacatggtggctcacaaccctctgtaacaag 242
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gttcttctgactgttgaaatccccgcaaccacatggtggctcacaaccctctgtaacaag 543

                                                                       
Query: 243 atctgactccctcttctacagtgtacttacatataataaataaataaataataaagtaaa 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 atctgactccctcttctacagtgtacttacatataataaataaataaataataaagtaaa 603

                                                                       
Query: 303 gagaaaagaaaagaaaagaaaaggagagaaaagaaaagaaaagaaaagaaaagaaaagaa 362
              ||||                                                     
Sbjct: 604 ---aaaa----------------------------------------------------- 607

                                                                       
Query: 363 aagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaa 422
                                                        |||||||||||||||
Sbjct: 608 ---------------------------------------------aagaaaagaaaagaa 622

                                                                       
Query: 423 aagaaaagcctcccactctgcgtttccttccttccaggctcctattcttatttcacatgt 482
           ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aagaaaagcctcccagtctgcatttccttccttccaggctcctattcttatttcacatgt 682

                                                                       
Query: 483 ctgtgatcgttccatgtatacatatttatattctattcctctcaccattaagttcacatg 542
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 683 ctgtgatcgttccatgtatacatatttatattctattcctctcacccttaagttcgcatg 742

                                                                       
Query: 543 tataatttaagagtctttgaaagaaaataagattttgtatcttgtgattcatgtaaaaga 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tataatttaagagtctttgaaagaaaataagattttgtatcttgtgattcatgtaaaaga 802

                                                        
Query: 603 gttgtctataagcctccggcctggggccaaaaacaaagcacctaa 647
           |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 803 gttgtctataagcctctggcctggggccaaaaacaaagcacctaa 847


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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