BAC Information

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BAC

Clone NameMSMg01-454I08
Chromosome16 (Build37)
Map Location 87,727,506 - 87,727,932
singlet/doubletsinglet
Overlap geneBach1
Upstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63
Downstream geneLOC100039901, Grik1, EG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454I08.T7 (MSMg01no454_i08.b1)MSMg01-454I08.TJ (MSMg01no454_i08.g1)
ACCAG541278AG541279
length735784
length of high quality
(start - end)
427 (49 - 475)376 (77 - 452)
definitionCHROMAT_FILE: MSMg01no454_i08.b1 PHD_FILE: MSMg01no454_i08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:44 2005CHROMAT_FILE: MSMg01no454_i08.g1 PHD_FILE: MSMg01no454_i08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGCG
GAATTCTTTTATTTACACACAATATAAATTTTTATAATCCAAAGCAATTC
CCCAATTTGTTCAGAATTTTAGTTTTCTTTTAAAATAAAAACAAGAGCAG
GTCAAGAATGCGCATGTGCGTGCTCGTGTGTAAGTCGGGTCTTCATTCAG
CCATTTCCTCTTACACAGACTCTGTCAGTTACTTCAGATGAAATCAGTCT
GCAGGTGCCAAGACGGGAACAGCACTGGCTTCTATCCCCGAGAAGAAACA
CATTAAAGCCATCTGTGTTTTCTTTTCTTTGCACCTCTCTGCAGCTAGTG
GGAATAGAAACAAGACCCTGGGAGAAACTAACAACCCTCTTTACTCAGTG
ATAGTTATACTAACGTCTGGCTTCCTCTGTCACCGCCGAGAGGAAGCCAT
TCTCAGCGGCAGGAGATTTAATGTCCAGTGCTGCTGGGCCTTCAAATTAT
GAAAGGTTAACTGTAACAGCGACCGGTTGGGCTTCCCTTTTACAAACAAA
ACCCCCATTTCGAAAAGCTCTCAAAAATTCCCACTTCTTTATGTAATTTC
TGGAATCTTTCGGGGAACTAATCTATCTTGGGGTTGGGGGCCCCCCCATA
AATCTCTATGGCCCCTTTTTAGACCCAAACCAACAAATCGTCCTCCAAAT
AATATTTCCGTCAAACGTCCCTCCTATATTCCATG
NCGATGACTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTGAGAGTTCGTGCAAGATCCTG
TCCCAAACTAAAACTGCAAAAGGCCTAGAGACGTCACTCGGTGGTAGCGT
GCTAAGGTACAGATGAAAACAGAATGATGGCTCACCACTTAAGAACAACC
GCTGCTCTTCTAGAAGATGTGGACTGCATTCCTACCATCCACGCGGCAGT
GTGGAACAGGCAATAATTCAATTCTGGTTCTAGGAGGTTTGCCACCTTCT
GGCTTCTGGGGGGCACTGCATGCATGTGGTGCGTAAATACACAGGGGAAT
GAAACACCCATATCCATAAAATTACAAAACACAAAAGCAAAGTCATGGGG
GAAATCCCACTTATTGCAAAGAGTTGCAAGGGCAGAGGAGGGAGAAGGGT
TGAGGGAGGACATATTTTTCCTGTTTTCCCCCCTTTCTCCCCCTTTTTTT
TTTTTCCTTTCTCTCTTTTTCCCTTCCCCCCCCCCTCTCCTTTTCCTCTT
TTTTTTGTTCCCCCCCCTTCTTCTTTTTTGTTTTTTCCCTTTTTTTCCTT
CTGTTTTTTTTTTTATCATCCCCCTTCCCCGTATTATCATTTTGCTTCGT
CCCCGCCCCCTTATTATTCTCTTCCTCTTCTTCTATCCCCTCTGATACAA
ATCTCTCGTCTTTTTTCAACTATTCTCTTTATTTATTTTCTCTTCTCCCC
ACCCCCCCTTTTTTTCTTTTTTTCCCCCGCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_i08.b1 MSMg01no454_i08.b1 CHROMAT_FILE:
MSMg01no454_i08.b1 PHD_FILE: MSMg01no454_i08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:44 2005
         (427 letters)



>mm_chr16_87727305_87728132
          Length = 828

 Score =  750 bits (388), Expect = 0.0
 Identities = 418/428 (97%), Gaps = 3/428 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   ggaattcttttatt-taca-cacaatataaatttttataatccaaagcaattccccaatt 59
           |||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ggaattcttttattata-agcacaatataaatttttataatccaaagcaattccccaatt 570

                                                                       
Query: 60  tgttcagaattttagttttcttttaaaataaaaacaagagcaggtcaagaatgcgcatgt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 569 tgttcagaattttagttttcttttaaaataaaaacaagagcaggtcaagaatgtgcatgt 510

                                                                       
Query: 120 gcgtgctcgtgtgtaagtcgggtcttcattcagccatttcctcttacacagactctgtca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gcgtgctcgtgtgtaagtcgggtcttcattcagccatttcctcttacacagactctgtca 450

                                                                       
Query: 180 gttacttcagatgaaatcagtctgcaggtgccaagacgggaacagcactggcttctatcc 239
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gttactacagatgaaatcagtctgcaggtgccaagacgggaacagcactggcttctatcc 390

                                                                       
Query: 240 ccgagaagaaacacattaaagccatctgtgttttcttttctttgcacctctctgcagcta 299
           ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||
Sbjct: 389 ccgagaagaaacacattaaagccatctgtgccctcttttctttgcacctctctgcagcta 330

                                                                       
Query: 300 gtgggaatagaaacaagaccctgggagaaactaacaaccctctttactcagtgatagtta 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gtgggaatagaaacaagaccctgggagaaactaacaaccctctttactcagtgatagtta 270

                                                                       
Query: 360 tactaacgtctggcttcctctgtcaccgccgagaggaagccattctcagcggcaggagat 419
           |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 269 tactaacgtctggcttcctctgtcaccgccgaaaggaagccattctcaacggcaggagat 210

                   
Query: 420 ttaatgtc 427
           ||||||||
Sbjct: 209 ttaatgtc 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 828
Length adjustment: 9
Effective length of query: 418
Effective length of database: 819
Effective search space:   342342
Effective search space used:   342342
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)