This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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Search Result
BAC
Clone Name
MSMg01-454I12
Chromosome
16 (Build37)
Map Location
28,246,891 - 28,247,132
singlet/doublet
singlet
Overlap gene
Fgf12
Upstream gene
Ostn
,
Uts2d
,
Ccdc50
Downstream gene
1600021P15Rik
,
EG666717
,
Hrasls
,
Atp13a5
Link
Open Mouse BAC browser
Click to get alignment info.
name
Ostn
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:239790
MGI:2677164
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Uts2d
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:224065
MGI:2677064
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Ccdc50
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:67501
MGI:1914751
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs
name
Fgf12
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:14167
MGI:109183
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs
name
1600021P15Rik
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:239796
MGI:1917028
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
EG666717
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:666717
MGI:3647612
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 55 ESTs, 6 Proteins
pseudo
: _no_value
name
Hrasls
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:27281
MGI:1351473
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Atp13a5
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:268878
MGI:2444068
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Ostn
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:133892371
GeneID:239790
MGI:2677164
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: osteocrin
transcript_id
: NM_198112.2
name
Uts2d
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:61744465
GeneID:224065
MGI:2677064
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: urotensin 2 domain containing
transcript_id
: NM_198166.3
name
Ccdc50
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:71043974
GeneID:67501
MGI:1914751
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: coiled-coil domain containing 50
transcript_id
: NM_026202.2
name
Ccdc50
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:71043969
GeneID:67501
MGI:1914751
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: coiled-coil domain containing 50
transcript_id
: NM_001025615.1
name
Fgf12
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118129945
GeneID:14167
MGI:109183
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: fibroblast growth factor 12
transcript_id
: NM_010199.2
name
Fgf12
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142376333
GeneID:14167
MGI:109183
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: fibroblast growth factor 12
transcript_id
: NM_183064.2
name
1600021P15Rik
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:86262156
GeneID:239796
MGI:1917028
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: RIKEN cDNA 1600021P15 gene
transcript_id
: NM_177718.3
name
Hrasls
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142366257
GeneID:27281
MGI:1351473
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: HRAS-like suppressor
transcript_id
: NM_013751.4
name
Atp13a5
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:141802262
GeneID:268878
MGI:2444068
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: ATPase type 13A5
transcript_id
: NM_175650.3
name
Ostn
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:37674267
CCDS:CCDS28090.1
GeneID:239790
MGI:2677164
definition
GO_component
: GO:0005615 - extracellular space [Evidence IDA]
GO_function
: GO:0005179 - hormone activity [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]
GO_process
: GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0045668 - negative regulation of osteoblast differentiation [Evidence IDA]; GO:0001503 - ossification [Evidence IEA]; GO:0030500 - regulation of bone mineralization [Evidence IC]
codon_start
: 1
note
: musclin
product
: osteocrin
protein_id
: NP_932780.1
name
Uts2d
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:37718974
CCDS:CCDS28091.1
GeneID:224065
MGI:2677064
definition
GO_component
: GO:0005576 - extracellular region [Evidence IEA]
GO_function
: GO:0005179 - hormone activity [Evidence IEA]
codon_start
: 1
note
: urotensin II-related peptide; urotensin IIB
product
: urotensin 2 domain containing protein
protein_id
: NP_937809.1
name
Ccdc50
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:71043975
GeneID:67501
MGI:1914751
definition
codon_start
: 1
note
: isoform 1 is encoded by transcript variant 1
product
: Ymer protein isoform 1
protein_id
: NP_080478.2
name
Ccdc50
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:71043970
GeneID:67501
MGI:1914751
definition
codon_start
: 1
note
: isoform 2 is encoded by transcript variant 2
product
: Ymer protein isoform 2
protein_id
: NP_001020786.1
name
Fgf12
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:34098929
GeneID:14167
MGI:109183
definition
GO_component
: GO:0005634 - nucleus [Evidence ISS] [Evidence IEA]
GO_function
: GO:0008083 - growth factor activity [Evidence IEA]
codon_start
: 1
note
: isoform b is encoded by transcript variant 2
product
: fibroblast growth factor 12 isoform b
protein_id
: NP_034329.1
name
Fgf12
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:34098966
CCDS:CCDS28092.1
GeneID:14167
MGI:109183
definition
GO_component
: GO:0005634 - nucleus [Evidence ISS] [Evidence IEA]
GO_function
: GO:0008083 - growth factor activity [Evidence IEA]
codon_start
: 1
note
: isoform a is encoded by transcript variant 1
product
: fibroblast growth factor 12 isoform a
protein_id
: NP_898887.1
name
1600021P15Rik
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:86262157
CCDS:CCDS28093.1
GeneID:239796
MGI:1917028
definition
codon_start
: 1
product
: hypothetical protein LOC239796
protein_id
: NP_808386.2
name
Hrasls
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:28144865
CCDS:CCDS28094.1
GeneID:27281
MGI:1351473
definition
GO_component
: GO:0005737 - cytoplasm [Evidence IDA]; GO:0005641 - nuclear envelope lumen [Evidence IDA]
GO_function
: GO:0003674 - molecular_function [Evidence ND]
GO_process
: GO:0007265 - Ras protein signal transduction [Evidence TAS]; GO:0001558 - regulation of cell growth [Evidence TAS]
codon_start
: 1
note
: Harvey rat sarcoma virus oncogene related suppressor
product
: HRAS-like suppressor
protein_id
: NP_038779.2
name
Atp13a5
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:28316742
CCDS:CCDS28095.1
GeneID:268878
MGI:2444068
definition
GO_function
: GO:0016787 - hydrolase activity [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
product
: ATPase type 13A5
protein_id
: NP_783581.1
name
EG666717
(CDS detail)
type
misc_RNA
link
vega
ensembl
MGI
NCBI
xref
GI:94400131
GeneID:666717
MGI:3647612
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 55 ESTs, 6 Proteins
product
: predicted gene, EG666717
pseudo
: _no_value
transcript_id
: XR_001911.1
clone name
MSMg01-497E19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-539J10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-515I16
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-301I04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-105D06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-105F06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-528H09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-341H23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-387I06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-319C08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-329B07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-411H07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-205A03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-128C15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-299A22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-148I07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-296N14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-381L13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-320C13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-355K18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-116L16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-116O14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-546E10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-273C23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-376I04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-131P23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-114A22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-188G13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-434H12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-349B07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-416C16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-469F13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-449P17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-365B19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-432K03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-280M10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-156B05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-273O17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-493E09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-189M05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-405G12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-349H14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-356E19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-441J19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-417K13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-270E15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-351D02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-340B02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-373C09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-086O19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-369E04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-076N11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-079G12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-436B22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-454I12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-145P11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-507H16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-151J13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-528O21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-402K12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-482P08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-113P20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-377F24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-158G15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-278C17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-278K15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-514M15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-202C15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-469E11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-397B02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-525O06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-306F11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-453N05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-475B14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-329D14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-327D10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-385G09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-095C17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-091F11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-439D07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-514M20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-050C02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-057F01
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-090I07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-391L01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-159L08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-483M22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-439B09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-138F16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-487C05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-381N11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-506G09
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-470F24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-182F12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-430J17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-143O01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-232A23
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-109B05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-543O02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-510J15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-472E22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-163M20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-405O13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-258L10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-273G15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-291G12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-216H15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-232F04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-230F10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-335H08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-096C09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-327N15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-122J19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-246L02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-215I18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-142G11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-341H13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-188K06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-265B16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-008B12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-224B21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-320O17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-096B19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-346F09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-002E24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-243D23
singlet/doublet
doublet
plural/unique
unique
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