BAC Information

Click to search

BAC

Clone NameMSMg01-454P01
Chromosome16 (Build37)
Map Location 89,347,859 - 89,348,352
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445
Downstream geneLOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik, Tiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454P01.T7 (MSMg01no454_p01.b1)MSMg01-454P01.TJ (MSMg01no454_p01.g1)
ACCAG541597AG541598
length1,062748
length of high quality
(start - end)
---494 (79 - 572)
definitionCHROMAT_FILE: MSMg01no454_p01.b1 PHD_FILE: MSMg01no454_p01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:18 2005CHROMAT_FILE: MSMg01no454_p01.g1 PHD_FILE: MSMg01no454_p01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGATGGGAATGCANGCTGGTTGGCGTTGCGGTTATAGTAGTTAGAGCGGA
CCTATACACAAGAGGGGGACGGGGTGGCGCCGTGTGCTGCGCCCCTCTCC
CCGCCCGGCGTTGTTATGATCCCGTTTGCTATAACACCCCCCAGAAAATT
AGACACCACCCACACCCTTCTCGCCTCGTTTCCCTTTCTTTCCTGCGATG
TCTCCTCACTCATTTCACCCCCCGGCTGCGGAGCCCCTCCCTAAGGACAG
CCACGACGCAAGATGTGTGGTTGTTAGTGATTGTTATCGTGCGTGTGGTT
GTGGCGGCGGGGGGGCGGGCAAGCAGAGCGGAATCGGTAAAATGTTTATT
CCATACCGCTCTTCGTGGCCGGCCGCGCCGCCTCGTTTCGCGTTATCTTC
ANTTCCGCTTGCGACACCACTTTGCCCGGCTTGTTTAAATTATTTTGTTG
TTCGGTGCGAAGCGCGCGGGGGAGCAACAGCCTCTTTATTCTATAATCTA
TCACGCTACATCGCCAAGAAGTACGAAAAACACCAATAAGTAAACCCGCG
TCCATCCCTCCCCTATTTGATGGACGTGTGGGGAGTATGAAGGAGGGCCG
GGCGGATCCTCTTCCGTGCGTCTCTTTCTTGGGGGAGTTGAAACCCCGCG
GTCAACAGATAGATTATTTATCTNCCNNGGGTTGAGGAGGGTTGGGGGGG
GGTTTAACTCNTTTAGGGTTAATAGGCTAANCCTNGNTCCGATNNCGTGC
ACNTANTCNNNTNNAANNTTGNCCNNTGCCAAGNNNNTGTACTGTTCTGT
TTTNNANTNTTTTTTTTTTACAAACACACTCACCCATATAAAAATAAACA
CCGCCCGCTCAGGTGTTTTTCCCTCCCCGCACACGCCCCCACCCCCCTCT
TCCGTTTCTTCTCGTTATNTAATGGGAGGGNNNTNACCCTGCCTCCCAAC
CCCACAACACAAAGAGGGAAAAGCAATTTGTGGGGGTGTGAGAAATAATA
ATTATATGAGATGGGGAACAAAGCACACAGAGCCAAATATTACCAATACG
GTGGGGTGGGGG
NCTCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTCTGGGCTTTTCTGTCTG
CAGTCTGTATATAGGGCATATCCTCTTCTATCTGTAAAACCTGACTCTCT
CTTGAGAGGACATTTACAAGCCACACACATAATGTACTGCAGTCTTACAT
TCTCAAGCTTAACTGAACAACTATTAAACACTCTTTATCCAAATAAAGTG
ATATTGATGAGTTCTAAATATTGGGACCTGATTCTTTGAAGGGCTATTAT
TTACTTAACTTCCTACAGTTTATTCCACTTACTAAATAGCACTGAAGACA
AGAAATTCACTGTGTGGTAAATATGTGTTATAGCAAGCTAGATGGTAATA
ACAGGTGTGGTTTGGGTAGGCTGTCTAGAGTATGGTAAAAGGAACTGTGA
TTTCAGAAATTGGAGACAAAAATAGCTTGGATTTAGAATACCTTCTTTGA
GNGGGCTTCATTAAGCCTAACGGAGGAATAAAATGGGTGAACTATACTCA
CACCTGCAGGAAAAGAGAGACTCTGTAAGGAAAATAGTCCCTATGTTTTT
GAAAAGTAAAGAACCCCTCATGGTCACCATATAAAAAGCCCTGGGAAAAA
AAGTACTCATCTTAAGGAGGTGATAAAAGGCCCTTGCCCACTAATATAAT
ACCTTTTATTCTTACCGAATTAACCCACGCAATCTTTGTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_p01.g1 MSMg01no454_p01.g1 CHROMAT_FILE:
MSMg01no454_p01.g1 PHD_FILE: MSMg01no454_p01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:18 2005
         (494 letters)



>mm_chr16_89347659_89348552
          Length = 894

 Score =  895 bits (463), Expect = 0.0
 Identities = 486/494 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtctgggcttttctgtctgcagtctgtatatagggcatatcctcttctatctgtaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtctgggcttttctgtctgcagtctgtatatagggcatatcctcttctatctgtaaa 260

                                                                       
Query: 61  acctgactctctcttgagaggacatttacaagccacacacataatgtactgcagtcttac 120
           |||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||| ||
Sbjct: 261 acctgattctctcttgagaggacatttataagccacacgcataatgtactgcagtctcac 320

                                                                       
Query: 121 attctcaagcttaactgaacaactattaaacactctttatccaaataaagtgatattgat 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttctcaagcttaactgaacaactattaaacactctttatccaaataaagtgatattgat 380

                                                                       
Query: 181 gagttctaaatattgggacctgattctttgaagggctattatttacttaacttcctacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagttctaaatattgggacctgattctttgaagggctattatttacttaacttcctacag 440

                                                                       
Query: 241 tttattccacttactaaatagcactgaagacaagaaattcactgtgtggtaaatatgtgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttattccacttactaaatagcactgaagacaagaaattcactgtgtggtaaatatgtgt 500

                                                                       
Query: 301 tatagcaagctagatggtaataacaggtgtggtttgggtaggctgtctagagtatggtaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatagcaagctagatggtaataacaggtgtggtttgggtaggctgtctagagtatggtaa 560

                                                                       
Query: 361 aaggaactgtgatttcagaaattggagacaaaaatagcttggatttagaataccttcttt 420
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 aaggaactgtgatttcagaaattggagacaaaaatagcttgtatttagaataccttcttt 620

                                                                       
Query: 421 gagngggcttcattaagcctaacggaggaataaaatgggtgaactatactcacacctgca 480
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaatgggcttcattaagcctaacggaggaataaaatgggtgaactatactcacacctgca 680

                         
Query: 481 ggaaaagagagact 494
           ||||||||||||||
Sbjct: 681 ggaaaagagagact 694


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)