BAC Information

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BAC

Clone NameMSMg01-455A15
Chromosome16 (Build37)
Map Location 13,975,526 - 13,976,153
singlet/doubletsinglet
Overlap genenone
Upstream geneErcc4, Gt4-1, Mkl2, Parn, LOC100043196, 3110001I22Rik, Pla2g10, A930007A09Rik, LOC622757, Rrn3, Ntan1, Pdxdc1, Mpv17l
Downstream geneIfitm7, 2900011O08Rik, 4921513D23Rik, Nde1, Myh11, 0610037P05Rik, Abcc1, Gm1758, Snai2, Efcab1, LOC100042737
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455A15.T7 (MSMg01no455_a15.b1)MSMg01-455A15.TJ (MSMg01no455_a15.g1)
ACCAG541673AG541674
length7331,805
length of high quality
(start - end)
644 (69 - 712)---
definitionCHROMAT_FILE: MSMg01no455_a15.b1 PHD_FILE: MSMg01no455_a15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:26 2005CHROMAT_FILE: MSMg01no455_a15.g1 PHD_FILE: MSMg01no455_a15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGTATCCCCAGGGATACACAGAAAAGTCCTGTCCTTGAAGAAAAA
AAAAGGTAGAGTAGTTTAAGATGAAACCCAGCACCAATCTCTGGCCTTTA
AATTCATGTGTATATACATATGCACAGTTATACCCACAAAAACATATTCA
TACATATACCACAAACCACACACACACACACACACACACACACACACACA
CACACACACACACACACACACACACACAAAAGACAGAGAGAAACTTAGGA
CTGGGTGTAGCAACATATGCTTTCAATCTCAGCATCCTGGAGGTTGAGGA
AAGAAGAGCGAGAGAGTTTGAGGCCAGTTTATGGTACAGATTGAGATTCT
CTCTCTCTCTCTCCCTTCCCCTTCCCCCCTGTTTGTGTGTGTGTTTGTGT
GTGTGCCCCTTCTACCCTCCACATGCAGCAGGAAAAAATAAACAGAAATT
AAACGATACATCACACAGAGTACCTACCATAGCTGGCAAGTGGCAGGGTC
AGGGGTTCATACAACCCAGTATTCCATATTTCAAAGCCTGTATTTTTGAA
AACCATGCTATTCTGATAAGCTCTGTATCATTCACATTTGAAACTGTCAA
CACACTGGATAAAGTATCAACTTATCAGGGTGATACTGCAGTATTCTCTG
TACTACCAGCTACTAANGAGGGGGCAGCCACTG
CACAACTACTGTNGAGNGCGNNNGGNGCTGGGAGAGGTGCCACGAGATCA
GATGTCTCACTATCGAGTCTCCTNTCGGGTGCGGGCTANNCTTCTTCTNN
TTATATGCGTACTCACTCAGCGCGCACCGTNACATCTATGTATTGCGGGT
CACGCCCCTCGCAGAGACGCTCTNGGCTACTCTCGATCGTAGTTACGCGC
AGCGAGCCATGTCGTGAGTGTNACTCTAGAGAGCGAAGTCGCACACTCAC
CAACCCCNTGTGCCATTGGTTGCACAGTGATGGTCGACGCGCCCTTATAT
GCACGTGCTCGGGACAGCTCCNTNCTCATCGTCTCTAGCGATGTNTATGT
TTCGTTGTAGCGTCGTCGACCGTTANTGCTACTACTCGGCATCGCAGTNA
CTACCCGAACAGCAGCGATGTGATTATAGATGAAGNTNTTGCTTCGAGNC
TGTGCACACTCTATCCTCACATGTCGTCGTGATGCTCAGACGTGAGCTCT
GACANGTCTTTCTGTGCGCCTCGACGCCTAAGCGCAGACATGAGTATATA
GATAGTTTGGAGATNGTCAGTGGTGGAGTATGACCGGCGCGCACGCTTNN
TGAACTCGACGTGAGTGGTGTAATGAGAGAGGCACATGCAAAGTGACATG
CACTATCGAGTTACATGCGAGTATGAGGCTATATCAGCGCNACGACTNTC
ATCATCACATTACCTATGATATGACCGCANTCAATGCTATATCACGTANT
NCTTATCTAGCCNTATGATGTGTTGCATCGATGATCGCTGCTATCTGATA
CGCGCGCGGCTGATGTAGCGGATGATGTACGAGTAGTCTCCGGCTGTACA
CATATGACTATAGCTCAGTTCATCTNGCTAGCTANTATTANATCACACCA
TATACAGACGCAGGTGTATGTATGATGTACTGCAGCGATATGGGATACGT
TAGGCTACTACTANTGTCGCACGTCGGTAGAGATGACTGTACGCATCTAA
GTTCAGCCTGCGATGACATCACGCACTGAGCGCGTAGTATAGCTACTGAG
TNTGCGCTGCGACTGNTAATGTATGTGACGTAGATTNGTNCGCTGATTAG
CTGCATCCACCGACGCTATCATANACTATCCCAGATGTAGATGATNCGCC
ATGNTGATNGTACAGATAGATACAGCGGCATCGATCACGTCNGTGNGACG
AGGAATACAGNATGTATAGACATATGCACTTCTGTCTGCGACGGACATCT
CTAGCCAGATGAAATCATAGCGCAGACGCTCTATGATTGCCGCGACAGTA
CTGATNATGAATGNTGATGGTGCTGAACTAGTCTACAGCNACGCTGCTCA
GATATGACGATGTTACGCAGATCGCGCAGCACAGTGACTGCTGACGCTGA
TGTGCCANGCTANTTGCTGCAGCGCTGTAGCGACGTGATATAGTCATATC
ATACGACTGCGATGCACATCTCGTCTGCTGTATATACTCTCTATCAATGA
TATTGACATACAGCTGANATCGACCGNCGTGCTGCACGAGTANTCGCACA
CGCTACGGTAGACTATCGTATGATGCNACATNATCAGTGCATATANGTCA
CTANGAGTGACGATCGNTAGTAGCGTAGCNTCGCGTACATGTGACGACGA
TGTCTATCTCTATCGCNCGCAGCTATGTGGTATTGTTATGATGCGCGATG
ATNGCGTCAGCGCATCGTAATTGATCTACTCGCTAGTNCATCGACTACAC
TACGCGCGTGATATCTGCCTGCGCAGACATGCAGAAANACTGCTNACTGN
TGAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_a15.b1 MSMg01no455_a15.b1 CHROMAT_FILE:
MSMg01no455_a15.b1 PHD_FILE: MSMg01no455_a15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:26 2005
         (644 letters)



>mm_chr16_13975326_13976369
          Length = 1044

 Score = 1129 bits (584), Expect = 0.0
 Identities = 622/644 (96%), Gaps = 16/644 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   atacacagaaaagtcctgtccttgaagaaaaaaaaaggtagagtagtttaagatgaaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atacacagaaaagtcctgtccttgaagaaaaaaaaaggtagagtagtttaagatgaaacc 260

                                                                       
Query: 61  cagcaccaatctctggcctttaaattcatgtgtatatacatatgcacagttatacccaca 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 cagcaccaatctctggcctttaaatgcatgtgtatatacatatgcacagttatacccaca 320

                                                                       
Query: 121 aaaacatattcatacatataccacaaaccacacacacacacacacacacacacacacaca 180
           ||||||||||||||||||||||||||||              ||||||||||||||||||
Sbjct: 321 aaaacatattcatacatataccacaaac--------------cacacacacacacacaca 366

                                                                       
Query: 181 cacacacacacacacacacacacacacacaaaagacagagagaaacttaggactgggtgt 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 367 cacacacacacacacacacacacacacacaaaagacaaagagaaacttaggactgggtgt 426

                                                                       
Query: 241 agcaacatatgctttcaatctcagcatcctggaggttgaggaaagaagagcgagagagtt 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 agcaacacatgctttcaatctcagcatcctggaggttgaggaaagaagagcgagagagtt 486

                                                                       
Query: 301 tgaggccagtttatggtacagattgagattctctctctctctctcccttccccttccccc 360
           |||||||||||||||||||| ||||||||  ||||||||||||||||| |||||||||||
Sbjct: 487 tgaggccagtttatggtacaaattgagat--tctctctctctctccctcccccttccccc 544

                                                                       
Query: 361 ctgtttgtgtgtgtgtttgtgtgtgtgccccttctaccctccacatgcagcaggaaaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ctgtttgtgtgtgtgtttgtgtgtgtgccccttctaccctccacatgcagcaggaaaaaa 604

                                                                       
Query: 421 taaacagaaattaaacgatacatcacacagagtacctaccatagctggcaagtggcaggg 480
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 605 taaacagaaattaaacgatacatcacacagggtacctaccatagctggcaagtggcaggg 664

                                                                       
Query: 481 tcaggggttcatacaacccagtattccatatttcaaagcctgtatttttgaaaaccatgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tcaggggttcatacaacccagtattccatatttcaaagcctgtatttttgaaaaccatgc 724

                                                                       
Query: 541 tattctgataagctctgtatcattcacatttgaaactgtcaacacactggataaagtatc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 tattctgataagctctgtatcattcacatttgaaactgtcaacacactggataaagtatc 784

                                                       
Query: 601 aacttatcagggtgatactgcagtattctctgtactaccagcta 644
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 aacttatcagggtgatactgcagtattctctgtactaccagcta 828


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 89
Number of extensions: 29
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)