BAC Information

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BAC

Clone NameMSMg01-455G12
Chromosome16 (Build37)
Map Location 76,926,250 - 76,926,789
singlet/doubletsinglet
Overlap genenone
Upstream gene4930578N18Rik, LOC100039457, Nrip1, LOC100039316, 1700063K16Rik
Downstream geneLOC665120, Usp25, 2810055G20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455G12.T7 (MSMg01no455_g12.b1)MSMg01-455G12.TJ (MSMg01no455_g12.g1)
ACCAG541953AG541954
length728635
length of high quality
(start - end)
568 (70 - 637)---
definitionCHROMAT_FILE: MSMg01no455_g12.b1 PHD_FILE: MSMg01no455_g12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:54 2005CHROMAT_FILE: MSMg01no455_g12.g1 PHD_FILE: MSMg01no455_g12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCACAGTAGGATCCGCGG
AATCACGTTTCCTGAAATTAAGATTGANAAATACTTTCCCCCAAGCACTT
ATATTTCTAAAGACAACAACTCGTTGATGCATGTTATCTAGATTTTCTTC
CTTTTAGATTTAACAAAGTTGTGGGCAAATTAATAAAATATCTCTAGGTT
TATTCAGAAATTACTCCTAAGATGAAAACATAAAGATTTTTTTTTTTTTT
TGCCAGTCAGTCTCGTACTTTATTGTCGTTTTCATCTCAGGCCTTGACTG
CTTCTCAGTCCTGAGCCTTAATCTTGGCCATTTCGGCGTTGTTCATGGCT
GAAGCCACCTGGTTCAAGAGAAAGAGGAAAGGGCGGAGCCTACTTCCTCA
ACTCAAGAAAGAATTTTAAGAATGACTCTTTTTAGGGTGAAGAGAATGTT
GTAACATTTGACTGTGGGTGTGGCTACACCAACATTGTGAATTTACTAAA
ACCATGAAAACATGATGAAAGAATGTATGAAAGAATGAATCCTATAGTAT
GAGATTGTACCTCAAAATAAAGCTGTTGGAAAAAATAGTAGGTTTATGTG
TAACATAAAATTCCTGTGCTAGCCTTATTTATAATAGCCAGGAGCTGGAC
CTCTACTCCCATTGATGAGCAAGGGCATCCTCTGCTACATATGCAGCTAG
AGGCATGTGTACTCCTTTGGCTTAGTCC
CATAAATGNANCCTGCNCCCCTTTCAAAATTANGGAACAAAATGCACAAC
ATTCAAACGGAACTAAAAAAAAAACGGTCGGTTATTACATTACAAGTCTG
CAAGTTAGATGCCGACTATTCTGTCGAGGGGACAAGGGCACAAANTGAAC
GATGAAAAATAACATGACTCATTCTAAATGNGCATCTTAAACACAAANCA
AAGNCCCTAACCAACATTCCCGGAATGNAACAAACTTTTTTCCTAAGGCT
TAAAAAAGAAATTAAAAATTCTTTAAAAAAAACCCGAAAAAACAACCTAA
AAATTTTAAAAAAATCCCTCCAAAAAANNNNNNNNTNTNTTATATTATTT
ANTCNCCCCCCNNCCCCCCCCCCCCCCCCCCCCCCCCACCNCCACCACCC
CCACCCACCAAACACACCACCCCCCACACCACCCCCCCCCCCCCCCCCCT
ACCTTTTTCCCCCCACCACCCCATCCCCCCCCCCCCCCCCCCACCCATTT
TTNCTCNCCCAACCCACCAACCCCACCAAAACCTTCACCCCCCCTCTCCC
CTCCCCCACCCACCCCACCAACACAACCAACATTCCCTTATACACATTTA
TCTTACCCAAAACACTAATTAAATTATTATATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_g12.b1 MSMg01no455_g12.b1 CHROMAT_FILE:
MSMg01no455_g12.b1 PHD_FILE: MSMg01no455_g12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:54 2005
         (568 letters)



>mm_chr16_76926250_76927217
          Length = 968

 Score =  996 bits (515), Expect = 0.0
 Identities = 535/544 (98%), Gaps = 4/544 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagattganaaatactttcccccaagcacttatatttctaaagacaacaactcgttgatg 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 aagattgaaaaatactttcccccaagcacttatatttctaaagacaacaactcgttgatg 481

                                                                       
Query: 61  catgttatctagattttcttccttttagatttaacaaagttgtgggcaaattaataaaat 120
           | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 480 cctgttatctagattttcttccttttagatttaacaaagttgtgggcatattaataaaat 421

                                                                       
Query: 121 atctctaggtttattcagaaattactcctaagatgaaaacataaagattttttttttttt 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 420 atctctaggtttattcagaaattactcctaagacgaaaacataaagattttttttttttt 361

                                                                       
Query: 181 ttgccagtcagtctcgtactttattgtcgttttcatctcaggccttgactgcttctcagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ttgccagtcagtctcgtactttattgtcgttttcatctcaggccttgactgcttctcagt 301

                                                                       
Query: 241 cctgagccttaatcttggccatttcggcgttgttcatggctgaagccacctggttcaaga 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 cccgagccttaatcttggccatttcggcgttgttcatggctgaagccacctggttcaaga 241

                                                                       
Query: 301 gaaagaggaaagggcggagcctacttcctcaactcaagaaagaattttaagaatgactct 360
           |||||||||||||||||||||||||||||||||||    |||||||||||||||||||||
Sbjct: 240 gaaagaggaaagggcggagcctacttcctcaactc----aagaattttaagaatgactct 185

                                                                       
Query: 361 ttttagggtgaagagaatgttgtaacatttgactgtgggtgtggctacaccaacattgtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ttttagggtgaagagaatgttgtaacatttgactgtgggtgtggctacaccaacattgtg 125

                                                                       
Query: 421 aatttactaaaaccatgaaaacatgatgaaagaatgtatgaaagaatgaatcctatagta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 aatttactaaaaccatgaaaacatgatgaaagaatgtatgaaagaatgaatcctatagta 65

                                                                       
Query: 481 tgagattgtacctcaaaataaagctgttggaaaaaatagtaggtttatgtgtaacataaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  tgagattgtacctcaaaataaagctgttggaaaaaatagtaggtttatgtgtaacataaa 5

               
Query: 541 attc 544
           ||||
Sbjct: 4   attc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)