BAC Information

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BAC

Clone NameMSMg01-456M06
Chromosome16 (Build37)
Map Location 62,099,887 - 62,100,306
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043524, LOC668183
Downstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456M06.T7 (MSMg01no456_m06.b1)MSMg01-456M06.TJ (MSMg01no456_m06.g1)
ACCAG542990AG542991
length770805
length of high quality
(start - end)
419 (69 - 487)192 (78 - 269)
definitionCHROMAT_FILE: MSMg01no456_m06.b1 PHD_FILE: MSMg01no456_m06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:42 2005CHROMAT_FILE: MSMg01no456_m06.g1 PHD_FILE: MSMg01no456_m06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGATCCGCGGAA
TTCAGTGGTCCACAATCCAGAAGCCAGACCTTACTAGAAACAAGGCTCAT
GGCAATCCTATCTTTGAACATCAGGCATCAGATGAAAAATGTTCCATGGT
TTGTAAATAGACTGTAATAGTAATCTATATTAATGGCTCAAGGAAGCTAA
TGAAAGGTCATTTTTCTCTCTTTTTAGAGCTAAACCTCACCGTATATGTA
AACACTGATTATAGTATAATTCTGTGTAAATGATAACTGGAATTTATGGG
TATAAGCTGTTTTTTTTAAATGAAATACAATCTCAACAGCTCTTCTGCCT
TGCATGTTGCAAAAGCAGAATTTGCAAGATATAAAATTGGACCAAATTTA
CTTCTACCAGTTACTAAAATTCATTCTGTGAAACAGGATAATTTTTCTAT
CTAGATAAGACAGGAGGAGGATTTCACATCATTTTTAGCCAGTCTTAAAT
AATAATGTGATCTTTGATTACTTCCAGTCAAGCTAGCTTATTTTAGCAAT
CCACTAGCATAACCATATGTAACTCTCCACAAATCATACTTATTTAAACT
TTCTCCGGTTAATAAACTCCTACCGAACATGAATTTCCCTACCTTCTTTC
CATTGCCCCAGATTACATAAATTGTTTTTTTCCCTTCCTTTTTACAAATT
TGGGTTTAGTGTAAACATTCGTTATAGAACTCCTTTCTTTTCTTAGCTCG
TTAGCTCCCCTTCCTCCCTA
TCTCGATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGC
AGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTGAGATTCCACCTCACACCAATCAGAATGGCTAAG
ATCAAAAATTCAAGTGACAGCAGATGCTGGAGTGGATGTGGAGAAAGAGG
AATATTCTTCCATTGTTGGTGGGATTGCAGGTTTGTACTACCACTCTGGA
AATCAGCCTGGCGGATTCTTTGATTATTTTAAATAGTACCACCATAGGAT
CCTGTAGTACCTTTTCTCGTCGCATGGCCAGATATATGCTCCAACCTGTC
CATATTTACGTTTGTTACCCCTCGCCCCCACGTTTTTTTTATTTACTTCC
ATTATTCGTTCTTTTTCGCTTCGCTTTTTATCCCTTTTTCCTTCGCTATC
TTTCGTCTTATCTTCTTTCGTTTTTCCTTCCCCTTTCTTTCGTTCTCCCT
CTCCTTTATCTATCACCTTTCCTTTTTACTTTTTTTATTCCCCTCTTATT
CTTCCCTTCTTCAGTTTTTTTTTCCTTTCTTTTTTCCCCTCCTTTTTCCT
TTTCTTACTCTACTCCTTTTTCCCCCTTATTTTTTCCTTTACTTTTACAT
CTTTTTACCCCTTCTCTTTATTCCTCTCCTTTATTTCCTTTTTCATTTTC
TTTCCCCCTACTTATCCCCTACCTATACCTATTACTCCACTTTTTTCTTT
CTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_m06.b1 MSMg01no456_m06.b1 CHROMAT_FILE:
MSMg01no456_m06.b1 PHD_FILE: MSMg01no456_m06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:42 2005
         (419 letters)



>mm_chr16_62099687_62100506
          Length = 820

 Score =  752 bits (389), Expect = 0.0
 Identities = 412/425 (96%), Gaps = 11/425 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaagccagaccttactagaaacaaggctcatggcaatcctatctttgaacatcaggcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 agaagccagaccttactagaaacaaggctcatggcaatcctatctttgaacttcaggcat 260

                                                                       
Query: 61  cagatgaaaaatgttccatggtttgtaaatagactgtaatagtaatctatattaatggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagatgaaaaatgttccatggtttgtaaatagactgtaatagtaatctatattaatggct 320

                                                                       
Query: 121 caaggaagctaatgaaaggtcat-ttttctctctttttagagctaaacctcaccgtatat 179
           ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaggaagctaatgaaaggtcaccttttctctctttttagagctaaacctcaccgtatat 380

                                                                       
Query: 180 gtaaacactgattatagtataattctgtgtaaatgataactggaatttatgggtataagc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaaacactgattatagtataattctgtgtaaatgataactggaatttatgggtataagc 440

                                                                       
Query: 240 tgtttttttt-----aaatgaaatacaatctcaacagctcttctgccttgcatgttgcaa 294
           |||||          |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttt-----gccagaaatgaaatacaatctcaacagctcttctgccttgcatgttgcaa 495

                                                                       
Query: 295 aagcagaatttgcaagatataaaattggaccaaatttacttctaccagttactaaaattc 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aagcagaatttgcaagatataaaattggaccaaatttacttctaccagttactaaaattc 555

                                                                       
Query: 355 attctgtgaaacaggataatttttctatctagataagacaggaggaggatttcacatcat 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 attctgtgaaacaggataatttttctatctagataagacaggaggaggatttcacatcat 615

                
Query: 415 tttta 419
           |||||
Sbjct: 616 tttta 620


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 820
Length adjustment: 9
Effective length of query: 410
Effective length of database: 811
Effective search space:   332510
Effective search space used:   332510
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)