Query= MSMg01no456_m21.b1 MSMg01no456_m21.b1 CHROMAT_FILE:
MSMg01no456_m21.b1 PHD_FILE: MSMg01no456_m21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:45 2005
(280 letters)
>mm_chr16_94644057_94644736
Length = 680
Score = 464 bits (240), Expect = e-135
Identities = 258/264 (97%), Gaps = 2/264 (0%)
Strand = Plus / Plus
Query: 18 ggaattccatt-tcacctgctatatagaaaatgagatcaatgtcatgtcgagggccataa 76
||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 ggaattccattat-agctgctatatagaaaatgagatcaatgtcatgtcgagggccataa 276
Query: 77 ggattcattactggatccagaaagtctaaatcccatgtgcgttttgtgagtaagggcatt 136
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 277 ggattcattactggatccagaaagtctaaatcccatgtgcgttttgtgagtgagggcatt 336
Query: 137 acttaatatttggtaatcggatgcttagaacttgactgtgggtgaatcacaattaaactt 196
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 337 acttaatatttggtaatcagatgcttagcacttgactgtgggtgaatcacaattaaactt 396
Query: 197 ttaaaactccaataagaagataattaagaagttgataggattttaagagacatttctgcc 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ttaaaactccaataagaagataattaagaagttgataggattttaagagacatttctgcc 456
Query: 257 cagaaactataaatgtgaccagtt 280
||||||||||||||||||||||||
Sbjct: 457 cagaaactataaatgtgaccagtt 480
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space: 181841
Effective search space used: 181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no456_m21.g1 MSMg01no456_m21.g1 CHROMAT_FILE:
MSMg01no456_m21.g1 PHD_FILE: MSMg01no456_m21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:45 2005
(244 letters)
>mm_chr16_94828602_94829245
Length = 644
Score = 468 bits (242), Expect = e-136
Identities = 242/242 (100%)
Strand = Plus / Minus
Query: 1 caggctacctggagctttacaataaggcctggtcataacaacaaaagcagacagtgagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 caggctacctggagctttacaataaggcctggtcataacaacaaaagcagacagtgagac 383
Query: 61 aaggagcttcaaagattaattaggtaccattttattaaactgagtgcaaatatacagttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aaggagcttcaaagattaattaggtaccattttattaaactgagtgcaaatatacagttt 323
Query: 121 cctattgttctctaattgtacctgtgctttatatatacttcataaataatttttgtctat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cctattgttctctaattgtacctgtgctttatatatacttcataaataatttttgtctat 263
Query: 181 atgaaaaaatatgatgcaccatggaattcaaaaggacaattcaggtggctcaaaagacac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atgaaaaaatatgatgcaccatggaattcaaaaggacaattcaggtggctcaaaagacac 203
Query: 241 ca 242
||
Sbjct: 202 ca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
