NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATGGAATTCCGAGATTCTTCAGTTGTAAATTGCAGTTCACTTT
CTCAGCATAAAAATCCCCACAGTAGACAACGGGATTGGTTTTATTTTATT
TATTTATTTTTAAATTATAGAAGCTAAGAAACATGAATTCATTGTCTAGA
TTGGGAAATCTTTCTTATTTGTTCACCGTCTGTGGACTGAATGATATTAA
CTTCCAGCCTGAATTTAACGTGCCATGTGAAGCCTTGAATTTCGTCTACA
ATCTTTAAAAGAAAAATTTGTTGAATAAATAAATGATCATTTGAAGTGTA
CCAATGAAATAGGAATATTAATTACATCCTAAGTAGCCATTCCTTTAATT
CATTTAACCTCATATTATGTGCTGTAAATACTCATTTAAATATTTGTTCC
TTTTAGCTAGTTTTCTCGGCTTTAAATGACTTATTTGATTTTGAAGTATA
CCTTAACTTCCTTTTGGAAATAAGCGCAGGGATACGATTATAACCCATCA
CAAAATTAACTTTCTTTATTTCCTAGCTACTACTGTATTATTGCCCAATC
TGACCACCTTGAAGATAAGGCTGTTATCAGGAAGCAATCGTAACACTTAT
TTTCTCTTATCCCACGGCTTATATTTACTGAAATTTTCCCATTTTAACAT
GGTTCCCTGGTAAAACCCGTTTTTTATTCCCCGGGGCCTTGGATTCGGAA
ATATAAGTGGTGTTTTTT

NNNCCCGATGATGTGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATTTCCTTCTTTGCGGTGAG
CACAGAGACTTGTGTGTGTCTGTGTTCTAGTTTTAAAAACTCAGTGGGTG
AGGGACATGTTAGAATTGGTGGTCGACAAGGCTGGAGAGGAAAAAATTGT
AAAGCCTATTAAGGACAGCTTCAGAGAAATGTGTTATATGTAAATACTTT
GTTCCTTGCTCACCTGGTTCCAAGAAGTAGCCAGGAAAATTGTTTACAAC
TGTGGGTCTCAAGAGAGAACCTTTTTGNATTCAATGTTCGTAACCCTATG
AGGTCTGAGAAATTGGTGGGGGTTAATTTGTGATACTTAGTGCTGGCCAG
GTTAACAGAATGAAGTTCAAGCTCAGGAATCAGTGACATGTTGTCTTTGC
TTGTGAAACATCTATAGCGTCAGAATACCTGCAGGAAGGTGGCGGGAATC
ACCAGCCACAGCTGTTCTGTGTGGNACCTGTGACAAGGAAAGGCTGTCCC
TCTTGCAAAAGTGTTTTGTGATCTGCTGCTTATTGTTCCCCATTCTTTGT
ATTAGTGCTTGCTGTTGCTTGCTTTTCCAAATATACCTCTTCTGTTACCG
TGGGGGCCCTTAACTTTTTTTTTTTTTTTTTTCGTTTCCTTCTTTACCCT
TTCTCTTTGCTATCCCCCCTCTTCCTGTCTTTCCTTTTTTTACTGTTCAC
CTTCTCTTTTTTTTC

Query= MSMg01no457_h12.b1 MSMg01no457_h12.b1 CHROMAT_FILE:
MSMg01no457_h12.b1 PHD_FILE: MSMg01no457_h12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:41 2005
         (451 letters)



>mm_chr16_66000000_66000850
          Length = 851

 Score =  841 bits (435), Expect = 0.0
 Identities = 447/451 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcagttgtaaattgcagttcactttctcagcataaaaatccccacagtagacaacggga 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ttcagttgtaaattgtagttcactttctcagcataaaaatccccacagtagacaacggga 687

                                                                       
Query: 61  ttggttttattttatttatttatttttaaattatagaagctaagaaacatgaattcattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ttggttttattttatttatttatttttaaattatagaagctaagaaacatgaattcattg 627

                                                                       
Query: 121 tctagattgggaaatctttcttatttgttcaccgtctgtggactgaatgatattaacttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tctagattgggaaatctttcttatttgttcaccgtctgtggactgaatgatattaacttc 567

                                                                       
Query: 181 cagcctgaatttaacgtgccatgtgaagccttgaatttcgtctacaatctttaaaagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 cagcctgaatttaacgtgccatgtgaagccttgaatttcgtctacaatctttaaaagaaa 507

                                                                       
Query: 241 aatttgttgaataaataaatgatcatttgaagtgtaccaatgaaataggaatattaatta 300
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aatcagttgaataaataaatgatcatttgaagtgtaccaatgaaataggaatattaatta 447

                                                                       
Query: 301 catcctaagtagccattcctttaattcatttaacctcatattatgtgctgtaaatactca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 catcctaagtagccattcctttaattcatttaacctcatattatgtgctgtaaatactca 387

                                                                       
Query: 361 tttaaatatttgttccttttagctagttttctcggctttaaatgacttatttgattttga 420
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 386 tttaaatatttgttccttttagctagttttctcggttttaaatgacttatttgattttga 327

                                          
Query: 421 agtataccttaacttccttttggaaataagc 451
           |||||||||||||||||||||||||||||||
Sbjct: 326 agtataccttaacttccttttggaaataagc 296


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no457_h12.g1 MSMg01no457_h12.g1 CHROMAT_FILE:
MSMg01no457_h12.g1 PHD_FILE: MSMg01no457_h12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:41 2005
         (245 letters)



>mm_chr16_65828829_65829473
          Length = 645

 Score =  458 bits (237), Expect = e-133
 Identities = 243/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttatttccttctttgcggtgagcacagagacttgtgtgtgtctgtgttctagttttaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttatttccttctttgcggtgagcacagagacttgtgtgtgtctgtgttctagttttaaa 260

                                                                       
Query: 61  aactcagtgggtgagggacatgttagaattggtggtcgacaaggctggagaggaaaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactcagtgggtgagggacatgttagaattggtggtcgacaaggctggagaggaaaaaat 320

                                                                       
Query: 121 tgtaaagcctattaaggacagcttcagagaaatgtgttatatgtaaatactttgttcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 321 tgtaaagcctattaaggacagcttcagagaaatgtgttatatgtaaatactttgttccaa 380

                                                                       
Query: 181 gctcacctggttccaagaagtagccaggaaaattgtttacaactgtgggtctcaagagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctcacctggttccaagaagtagccaggaaaattgtttacaactgtgggtctcaagagag 440

                
Query: 241 aacct 245
           |||||
Sbjct: 441 aacct 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)