BAC Information

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BAC

Clone NameMSMg01-457I06
Chromosome16 (Build37)
Map Location 61,268,080 - 61,268,328
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha6, LOC100043804, EG668168, LOC668170, LOC100043524
Downstream geneLOC668183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457I06.T7 (MSMg01no457_i06.b1)MSMg01-457I06.TJ (MSMg01no457_i06.g1)
ACCAG543564AG543565
length781782
length of high quality
(start - end)
356 (52 - 407)249 (82 - 330)
definitionCHROMAT_FILE: MSMg01no457_i06.b1 PHD_FILE: MSMg01no457_i06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:45 2005CHROMAT_FILE: MSMg01no457_i06.g1 PHD_FILE: MSMg01no457_i06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCTATGTATTTCTGTACCCTATATTTTACCTAAATTATT
TGTGGTCTTTATAAATCTGGTTTGTGAGTACATTATATTTTTTGAATACT
AAGTCTCTGTTGGATGTAGACTTGAGGAAAAAATCTATTCTCTTTTTGAA
GGAAGCTGCTTTGTCAACTACTGGTGTCTTTTATGATACAGAAAGCTTTT
CAGTTTCATGAAGTCTCATTTATTATATGTTGGTCTTAGTGTCTGTATTA
TCTGTCTTCTATTCAGAGAGCCAACTCCTGTGTCAATGTGTTGAATGCTA
TTTCTCAATTTCTCTTCTATCAGGTTCAGTGTATGTAATCCTGGGTTGAT
GGCTTTGATCCACTTATACTACAGATTTATGCAAGGTGATAAATGCCCAT
CAGTTTGTATTATTCCTCCTTCCTATTATCATGGTAGCCATCTTATCTTG
CTTGAAAAATATTGTCACGGCCCAATGTGTTTTTTATGTTTTCTCTCTCA
ACATTTAAGAATTTTCCCTTTCATTTTTTTTTCTGCTCTTCTCCTCTATG
TCGTTCATCCTAATTTATATTTTCTTGTCTTTCTTTTTTCACAACATACT
CTTTCTTCTTCTACGACTTCTTACCTCCCTTTCTTCCCTACCTATTTTCC
TTTGTTTTTCTTATACTCCTTTTCTCATTTTCCTCTACTCTCTTCTTTTC
CAATCCTTTCTTTTTTTTTCTTCTCCTATTT
NNCCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCTGTAAGCATGATCCA
ACATTCTTAACACTTCAGAAGGATCCGTTGAGCAGTGTATTCTAATTTTG
ATTTTCTTAATTAATGAAAAAAATGTGGTATCTTAGGACAATCTTTGAAA
ATTATTGGACATGTAATTATTACGCTGGTTAATTTTTCCTCCACAGAGGA
ATTCTCTGTAACCTATAGAAAATACACTAAATCAAATAACATAATCCTTA
TTTTAGAAATGAAGGAAGATTAATCTACTGTTTTTTAATATTGTGTATTC
CCAAAAGAACAGAAACACTTATTATTTCCCAGAACATTTTCATTTACTTT
CCTTTTTTAAAGATTGGCTTTCTCTAAAAATTGTCTCACGATAAAGATTA
TGCTCAGTAAAGCAAGCTGGAATTTATTCTGTTCTCCTCATAAATAAGAC
CCTTATGTCCTTAGTAATGTTACCTCTTTATTTTAATCCCCCTTACATTT
TGTATTTAAAGACTTTGTTTTTTGGTTTTTTATTTTTGATTACCTTTTCT
TTTTAATCCCCTTTTTCCCCTATAATCCTGCCTGTTCCCCTTTATTCGCC
CTTTTTTTTTCCCCTCCTTTCCCTTCACCTTTTTTATCTTTATCTTTTTC
GCGCCTCTCAGTATTCTCTCTTTCTCTTCCTCCATTTATTTGTTTTCTTT
ATTTCTTTCCCCCTTTCTTGTACCTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_i06.g1 MSMg01no457_i06.g1 CHROMAT_FILE:
MSMg01no457_i06.g1 PHD_FILE: MSMg01no457_i06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:45 2005
         (249 letters)



>mm_chr16_61267880_61268528
          Length = 649

 Score =  458 bits (237), Expect = e-133
 Identities = 246/249 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catctgtaagcatgatccaacattcttaacacttcagaaggatccgttgagcagtgtatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catctgtaagcatgatccaacattcttaacacttcagaaggatccgttgagcagtgtatt 260

                                                                       
Query: 61  ctaattttgattttcttaattaatgaaaaaaatgtggtatcttaggacaatctttgaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaattttgattttcttaattaatgaaaaaaatgtggtatcttaggacaatctttgaaaa 320

                                                                       
Query: 121 ttattggacatgtaattattacgctggttaatttttcctccacagaggaattctctgtaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 ttattggacatgtaattattacgctggttaatttttcctccacagaggaattttctgtaa 380

                                                                       
Query: 181 cctatagaaaatacactaaatcaaataacataatccttattttagaaatgaaggaagatt 240
           |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctagagaaaatacactaaatcagataacataatccttattttagaaatgaaggaagatt 440

                    
Query: 241 aatctactg 249
           |||||||||
Sbjct: 441 aatctactg 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)