BAC Information

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BAC

Clone NameMSMg01-457J13
Chromosome16 (Build37)
Map Location 67,490,383 - 67,490,734
singlet/doubletsinglet
Overlap geneCadm2
Upstream gene9330155M09Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457J13.T7 (MSMg01no457_j13.b1)MSMg01-457J13.TJ (MSMg01no457_j13.g1)
ACCAG543625AG543626
length773740
length of high quality
(start - end)
465 (71 - 535)500 (81 - 580)
definitionCHROMAT_FILE: MSMg01no457_j13.b1 PHD_FILE: MSMg01no457_j13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:52 2005CHROMAT_FILE: MSMg01no457_j13.g1 PHD_FILE: MSMg01no457_j13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTAACAGTTGGCGTGGGACTAGATCTTACTCTTTGCCTGCCCTT
GGGCTCCTTTTCTACTAGTAAGTGGTCTTGCTCAGCTCTGATTTGAGGGT
TTGCGCCTAGTCTCAGTGTAATTTGTTATGCCCTGTACGGTTGATATCCC
TGGGTGTCTTGTGTTTTTCTGAGAGAAAGCAGAGGAAGAAGAGATCGAGT
GAGAGTGGATGTGGGGAAAAGTCCTGGGGGGAGCCGAGAGGAAGGAATCT
GTGGTTAGGATGTATTGTATGTTTTTTAAACATTTAAAAATAAAGTAGGT
ACTTTCTTCTATTCTTCAGACTAGTGTCCTCGAAATATATCACTGCTTTC
ATAGAAATCAAATTATAGTTGGATGAGAAAAAAGTGTAAAGAGAATACAG
TAAGCAAAATAAGGAAAAATTAATACACAATAGAGTATAAGGGTCTATGA
TTTGCAAAGAATGATACTCCAGGCTCAAATAATATGCCACAGTAAAGAGC
ATTTATTCTGCAGAGAACCTGCATGCAGGGGTCCATCACAGTTCAAGATG
GACGATATAAGGGTAAATTCTGTCTGGGTCATTTTACAAACTGTCCTGGG
GCATTTCTTTTTTTTTTTTCCCCTCCTTTTTCCTTGAATTGGGGGGATTT
AATTCCAAGGTGTCTTTGGGGGCCTTTGTCGTACCCTTCATCGCCCTGGG
GTTAATTCCTACACTCCGTGTTT
NNNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGTAAACGTAAATAAAAAT
TATTCCAAGACAGCAAGGTGGCCCTTTGTGTGAAAAAAGGCTGGCTGCTA
GTGACTGAGAAATTGAGTTTAATTCTTAGAAACCAGAAAGGAAGGAAACA
ACCACCTTCTGAAGTTTTCCTCTGACCTTTACATGTATGATATGATGTGA
TGTGATGTGAAAACTTGGTCACAATCCTAAGCATGCATGCACACACATTC
ACACAGAGAGCAATAAAATAAAATATATTATTTCTATTAAAACATTTAAA
GTGACCCACAAAATAGATGTTTGCTAAGTATATACAAACTGTATATGTAT
ATATATATATATATATATACACATATATGAACTAAGTGAATATGAATAAT
AATAGCAAATGTTGATTAACCTTATATAGTGGATTCAAGCAACAATAGAC
CTCTGTGCTCTCAGGGAACTCAGTAGGAATCAACACTGATAAACCCCATC
AATTTTTACATAAACTCATGGAAAGAATACAGCTTATCCAACCTTCAATT
ATTTAGTTGACTTACTCAAGATCAACTGGCTTAATAATTCATAATTAGGA
ATTTTAGTATCTATTATTTTGTTTACTATACCAAGTTCTCCAAATATCTT
GGTCCAAAAAACAACATGTATTTTTCTAACACTATTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_j13.g1 MSMg01no457_j13.g1 CHROMAT_FILE:
MSMg01no457_j13.g1 PHD_FILE: MSMg01no457_j13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:52 2005
         (500 letters)



>mm_chr16_67489835_67490734
          Length = 900

 Score =  456 bits (236), Expect = e-132
 Identities = 300/352 (85%), Gaps = 50/352 (14%)
 Strand = Plus / Minus

                                                                       
Query: 199 aagcatgcatgcacacacattcacacagagagcaataaaataaaatatattatttctatt 258
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 900 aagcatgcatgcacacacattcacacagagagcaataaaataaaatatattaattcaatt 841

                                                                       
Query: 259 aaaacatttaaagtgacccacaaaatagatgtttgctaagtatatacaaac------tg- 311
           |||||||||||||||||||||||||||||||||||||||||||||||||||      || 
Sbjct: 840 aaaacatttaaagtgacccacaaaatagatgtttgctaagtatatacaaacggtatatgt 781

                                                                       
Query: 312 -------------------------tatatgtatatata----------tatatatat-- 334
                                    ||||||||||||||          |||||||||  
Sbjct: 780 atatatatatacatatatatatatatatatgtatatatatatacatacgtatatatatac 721

                                                                       
Query: 335 ------atatacacatatatgaactaagtgaatatgaataataatagcaaatgttgatta 388
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 atatacatatacacatatatgaactaagtgaatatgaataataatagcaaatgttgatta 661

                                                                       
Query: 389 accttatatagtggattcaagcaacaatagacctctgtgctctcagggaactcagtagga 448
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 accttatatagtggattcaagcaacaatagacctctgtgctctcagggaactcagtagga 601

                                                               
Query: 449 atcaacactgataaaccccatcaatttttacataaactcatggaaagaatac 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 atcaacactgataaaccccatcaatttttacataaactcatggaaagaatac 549


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)