BAC Information

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BAC

Clone NameMSMg01-458I10
Chromosome16 (Build37)
Map Location 58,135,418 - 58,135,662
singlet/doubletsinglet
Overlap geneLOC100043477
Upstream geneTomm70a, Nit2, Tbc1d23, Tmem30c, 2610528E23Rik, 4631422O05Rik, Col8a1, LOC435480, LOC629342
Downstream geneDcbld2, St3gal6, LOC100043480, Gm813, E330017A01Rik, Cpox, LOC100043790, Gpr15, Cldnd1, Olfr172, Olfr173, Olfr174, Olfr178, Olfr180, Olfr1563-ps1, Olfr181, Olfr182-ps1, Olfr183, Olfr185-ps1, Olfr186, Olfr187, Olfr188-ps1, Olfr189-ps1, Olfr190, Olfr191, Olfr192, Olfr193, Olfr1540-ps1, Olfr194
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458I10.T7 (MSMg01no458_i10.b1)MSMg01-458I10.TJ (MSMg01no458_i10.g1)
ACCAG544335AG544336
length1,504745
length of high quality
(start - end)
---242 (73 - 314)
definitionCHROMAT_FILE: MSMg01no458_i10.b1 PHD_FILE: MSMg01no458_i10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:09 2005CHROMAT_FILE: MSMg01no458_i10.g1 PHD_FILE: MSMg01no458_i10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTGTCAAAGAGATACGTACGGATNCTGNTGCAGTAAGNCGTAGTGTGAGG
GTGCGGACGTGACTCTCTCTCCACGTACGGGATAGACAGGAAGTGCGCGA
NGTACAACATCTATATACTCATCACCTCACAACGCGACAANATCCTGTAC
TCACGAGACTATTAGATACTATTACTCTACACGGAATACTATGCTATAAC
GCGGGCAGTGANTGCGAGCGTGGCAGTAGGTTNTCATGCTAGACTTCTCT
ATGACCGCANCTATCATCCATTAGTGCATAACAACAACAATATATAGCAG
ATAATACAACNCACACGAAAGGCGACGAGCTAAGCGGTAGCGCGAGCGAC
ACGATATAGATGTATATGTGAGTGAGTGGGTCGTGCGGTGCTCGATCGCC
GTGATCAGACACTGGTACAGATATGCACCTGCTCTTCGATGCGACAGGAG
AGTGCCATGCTACTATCAGCTATAGACAGCAGCTACTAGCGAGCATGATG
TATATAACAGTAGCGTGATCATGATACGTAGAGTAAATGAGTACGACTAG
TCAGAGTGTCGGACGTGCGTCGGACGCGTGCGCTAGCTGACACACGTGTC
GGCGGGCGCTGTGTGTCTGTCGATCGTGTGGTTCCTATTGTGGTCTCAAT
AACGACCTGGCGAGTTCCTTCGACAGCAGACCGTACCATCGGCTGCGTAT
CATTATCACTCACTCATCAATCGTGCGTAAGCATGTAACGTATAGATGTT
GCTCCCATCTCTCTCCCACTTACTAATATGCTATCATTCACTCGTTACAT
CTGTATCGCATGTCAGATACGCACACANATAGCTACCAATCGTTCTCATG
TACGCATATCTGAGACGTAGAATGACCACATAAGTGTACGTAAGTGGTGT
CGTGGACATACATACGTGAGCTCATCGCTGAAGCGAGACAACGGTAGCGT
AATAGACGTAGACAAAGCACGTAGGTATTGTCTATAATAGCCGAGACGAC
AACAGTCGAGACGCTAGANAGCATGACGCGACGTAAGAGAGATGTGAGAG
GACACATTACACGGATGCNGAACTGATGGAATGACANGTGAGAGAGAGAC
TGACGAGCGCGCTGCTCATATACGTACGACTATAGACACTACGCGCGATG
GTGAGTGAGACACAACTCGAAATCACGATTACACATACGAAGCGCGACAG
TGTATGACGCGATGGCTCCGCTCTCACAACTGATCCTCTACACACACACG
CGCTCGCACACGCTATATAATAGGCGATAGATCATTGATCATTACACGAT
CAGTGATAGAGCAGCTTCAGTGCTAGATCAGACGCACACGCCACACGGTT
CGCAGACGATCGACTAGCAACATGCAGTATAGGACACGTACGGTGTCGCT
CGACGGTGCACAGAGAGAGTGGCATGATGACACACACNANCGACGTCGTC
AGTACGACAGTTATGCGTCGTATATTTCTCTATTCACCAGCTGTGTGAGC
GCAC
CGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTAGCACTAAATAGGAGGGCTTGGTTG
CTTTTGCTTTTGTGTTGTTCATACTCATGAAGAAGTTGATGAACAAGATT
TCGAGTATTGAGGAAGGATGCTCTTAAAGTCTTCTGCCCACTTTGGTTAT
TAGCACTCATCCTCCCATTCTCTGTATATTCTTTAGTTGACAACTATGTG
TTTTATTGTTGCCTGTTCCCTGGACTACTCATGCCTGACCCTGCCTGCCC
TCTGGGGTTGGAGGTTAAGTTGCCTCCAGAGTCAATGACACAGACTCCCG
GAGCAGGTAATAAATGCCACAGCAAGCTCACCTGAACAGTGCTGCAAGCT
TCTTTAACACACTCCACTTGCGCCCCCTTGGTCCCAAGAGAGCATCTCTT
CTAAACAACAGTTCCCGATTGGCTAGCACTGTTTGCTTCAGCAATCCTTG
GTTTCTCAGGCAGTCTTCAGCTAGGTCCTCCTGCAGGAGAATCTTTTGCG
GCTGGCTGCGCAGCCCCTGATGCTTATCTACAGGTGGCCCAGCCATTCCT
GCTACAGTACATAGCAAGAAATCATGAAGGCTAAGCATATATACATAAGC
AACATATTGTTTCTATGTCTTGCGATCTTGCCTCCTCCCTCTGACAGGTT
CAAATGCCTATGTGTACATTTGAACATTGTCTCACAGTCAATAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_i10.g1 MSMg01no458_i10.g1 CHROMAT_FILE:
MSMg01no458_i10.g1 PHD_FILE: MSMg01no458_i10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:09 2005
         (242 letters)



>mm_chr16_58135218_58135862
          Length = 645

 Score =  397 bits (205), Expect = e-115
 Identities = 234/245 (95%), Gaps = 3/245 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctagcactaaataggagggcttggttgcttttgcttttgtgttgttcatactcatgaag 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 445 tctagcactaaataggagggcttggttgcttttgcttttgtggtgttcatactcatgaag 386

                                                                       
Query: 61  aagttgatgaacaagatttcgagtattgaggaaggatgctcttaaagtcttctgcccact 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagttgatgaacaagatttcaagtattgaggaaggatgctcttaaagtcttctgcccact 326

                                                                       
Query: 121 ttggttattagcactcatcctcccattctctgtatattctttagttgacaact---atgt 177
           || |||||||||||||||||| ||||||||||| |||||||||||||||||||   ||||
Sbjct: 325 ttagttattagcactcatccttccattctctgtctattctttagttgacaactgctatgt 266

                                                                       
Query: 178 gttttattgttgcctgttccctggactactcatgcctgaccctgcctgccctctggggtt 237
           | |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggtaaattgttgcctgttccctggactactcatgcctgaccctgcctgccctctggggtt 206

                
Query: 238 ggagg 242
           |||||
Sbjct: 205 ggagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 645
Length adjustment: 9
Effective length of query: 233
Effective length of database: 636
Effective search space:   148188
Effective search space used:   148188
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)