BAC Information

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BAC

Clone NameMSMg01-458J24
Chromosome16 (Build37)
Map Location 14,226,756 - 14,227,010
singlet/doubletsinglet
Overlap geneMyh11
Upstream geneGt4-1, Mkl2, Parn, LOC100043196, 3110001I22Rik, Pla2g10, A930007A09Rik, LOC622757, Rrn3, Ntan1, Pdxdc1, Mpv17l, Ifitm7, 2900011O08Rik, 4921513D23Rik, Nde1
Downstream gene0610037P05Rik, Abcc1, Gm1758, Snai2, Efcab1, LOC100042737, LOC665653, LOC385748
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458J24.T7 (MSMg01no458_j24.b1)MSMg01-458J24.TJ (MSMg01no458_j24.g1)
ACCAG544410AG544411
length749758
length of high quality
(start - end)
254 (78 - 331)434 (71 - 504)
definitionCHROMAT_FILE: MSMg01no458_j24.b1 PHD_FILE: MSMg01no458_j24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:17 2005CHROMAT_FILE: MSMg01no458_j24.g1 PHD_FILE: MSMg01no458_j24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGGNAAACCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTCANAAAT
CCGCGGAATTCTGTGACATTCCCGAGGACATTGGCTTATTCTGACACTCA
GGTGTCCTGAAGGATGTCCAAACTGACACTACTTAGAGGCTCTTTTCCCA
TCTCTGCCCTGCTAGCAGTAGAAGCACTGACCACCAGAGGGAAATATGGG
GGATGGTACCCAAGATGGGATCTGTCATCTCCCAGAGTATCACCTGCACA
AAAATCCTCCTTTGATCGCCATCTTCACAGCTCAGTCCTCTGGCTTGTGG
CAGAGCCCAGAAGCTGATGTTACCCTTCATGTTTCTCCACAGTGGACCGC
ATTGTGGGGCTGGACCAGATGGCCAAGATGACTGAGAGCTCACTGCCCAG
TGCCTCCAAGACCAAAAAGGGCATGTTCCGCACCGTGGGCCAGCTCTACA
AAGAGCAGTTGGGGAAACTGATGACTACACTGCGCAATACCACACCTAAC
TTTGTGCGCTGCATCATTCCCAACCATGAGAAGAGGGTGAGGCATATCCC
AACTTGGGCCTTCTGCATACGGGATAGTACTGGGGTGGGGGGCTGTAGAA
AGGAACCTGGGAGACAGCAAGGTACACTATTGAAGTGAATGGGCAGAAGA
AGGGTCTGAACTTGTTTTCTGCCCTGAACCCATCCAAGAAGGGCTGGCCC
TACCCATGGAAAAAGGTGGCCGGATTTGGGGCTCTTCCCATGGGCTGAA
CCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAGAAATTCTTTGTTTAGCTCTGTACCCCATTTTT
AATGGGGTTATTTGACTTTCTGCAGTCCATCTTCTTGAGTTCTTTATATA
TATTGGATTTTAGTCCCCTATCTGATTTAGGATTGATAAAGATCTTTTCC
CAATTTGTTGGTGGCCTTTTTGTCTTATTGGCAGTGTCTTTTGCCTTACA
GAATTCTTTGCAAATTTATGAGGTCCCATTTGTCAATTCTTGATCTTACA
GCACAAGCCATTGCTGTTCTGTTCTGTTTTTTTTCTCCTGTGACCATATC
TTCGAGGTTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTT
TAATGTGGTTTAATGTTCCTTGATCCACTTAGACTTGAGCTTTGTACAAG
GAGATAAGAATGGATCAATTTGCATTCTTCTACATGATAACCACCAGTTG
GTCCTGTACCATTTGGGAACCAAAGAGTTTATTGTGAGGCGTTATTTACA
GGGTAACGGTTGACCCCATAGCAGGTTGACCATCCTAAAGTCTCATCCAG
TATGGATGACAACTGCCCCCTAGGTGCACCGACCCCCTTATTAACTTCCG
CTTACTTTTCTAGTTTTTTGTACACTCCAGTACCTCCCCAAGATGACTAT
GATGTTTGCTGGCCCCTTATTGGCATATTTACATACCACTTGCCTTGATA
GGTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_j24.b1 MSMg01no458_j24.b1 CHROMAT_FILE:
MSMg01no458_j24.b1 PHD_FILE: MSMg01no458_j24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:17 2005
         (254 letters)



>mm_chr16_14226556_14227210
          Length = 655

 Score =  470 bits (243), Expect = e-137
 Identities = 252/255 (98%), Gaps = 1/255 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acattggcttattctgacactcaggtgtcctgaaggatgtccaaactgacactacttaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 acattggcttattctgacactcaggtgtcctgaaggatgtccaaactgacactacttaga 396

                                                                       
Query: 61  ggctcttttcccatctctgccctgctagcagtagaagcactgaccaccagagggaaatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ggctcttttcccatctctgccctgctagcagtagaagcactgaccaccagagggaaatat 336

                                                                       
Query: 121 gggggatggtacccaagatgggatctgtcatctcccagagtatcacctgcac-aaaaatc 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 335 gggggatggtacccaagatgggatctgtcatctcccagagtatcacctgcacaaaaaaac 276

                                                                       
Query: 180 ctcctttgatcgccatcttcacagctcagtcctctggcttgtggcagagcccagaagctg 239
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ctcctttgatcaccatcttcacagctcagtcctctggcttgtggcagagcccagaagctg 216

                          
Query: 240 atgttacccttcatg 254
           |||||||||||||||
Sbjct: 215 atgttacccttcatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 655
Length adjustment: 9
Effective length of query: 245
Effective length of database: 646
Effective search space:   158270
Effective search space used:   158270
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)