Query= MSMg01no459_m01.b1 MSMg01no459_m01.b1 CHROMAT_FILE:
MSMg01no459_m01.b1 PHD_FILE: MSMg01no459_m01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:47 2005
(493 letters)
>mm_chr16_54706266_54707158
Length = 893
Score = 930 bits (481), Expect = 0.0
Identities = 490/493 (99%)
Strand = Plus / Minus
Query: 1 taaaattactttctttgtgtgaatgaattaacaatcaaggtcaaatcttaacctcactat 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 693 taaaattactttctttgtgtgaatgaattaacaatcaaggtcaaattttaacctcactat 634
Query: 61 ttataataagccttgtagtcatattctgtagacttcaaagataagaaaatatataggata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ttataataagccttgtagtcatattctgtagacttcaaagataagaaaatatataggata 574
Query: 121 ttaattttctaatggtctaaaagtagaccacttcatcataggttaatgagctgtccacac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ttaattttctaatggtctaaaagtagaccacttcatcataggttaatgagctgtccacac 514
Query: 181 acctgtggcaagccttccgaccacattaacagcaaagcattcttatttagagaagatcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 acctgtggcaagccttccgaccacattaacagcaaagcattcttatttagagaagatcaa 454
Query: 241 tagctgtggatatttttcttttatggagtccagtttacagctcacttttaatatcattta 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tagctgtggacatttttcttttatggagtccagtttacagctcacttttaatatcattta 394
Query: 301 aaagtatataagccaattctacatgacagttttatgaccattgtaatagctcaagtttaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aaagtatataagccaattctacatgacagttttatgaccattgtaatagctcaagtttaa 334
Query: 361 tttttggtaataaataatagtctagtgcaaatttagaagaagaaaaaacaacaaccaaaa 420
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tttttgctaataaataatagtctagtgcaaatttagaagaagaaaaaacaacaaccaaaa 274
Query: 421 gaaaattaaatagtgtttagatttataggatagttcaactgtagcaggcaaatggcatat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gaaaattaaatagtgtttagatttataggatagttcaactgtagcaggcaaatggcatat 214
Query: 481 ttgtgaaagatac 493
|||||||||||||
Sbjct: 213 ttgtgaaagatac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space: 426489
Effective search space used: 426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no459_m01.g1 MSMg01no459_m01.g1 CHROMAT_FILE:
MSMg01no459_m01.g1 PHD_FILE: MSMg01no459_m01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:48 2005
(503 letters)
>mm_chr16_54583105_54584007
Length = 903
Score = 789 bits (408), Expect = 0.0
Identities = 480/504 (95%), Gaps = 2/504 (0%)
Strand = Plus / Plus
Query: 1 agtagtcagttctttactcagctgataaatcacagtgctatcaaagggaggaagaaagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtagtcagttctttactcagctgataaatcacagtgctatcaaagggaggaagaaagga 260
Query: 61 gcaggcacttagaggactgtgactgctggggtatcattgcttctgttgcagtgacctttc 120
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 gcaggcacttggaggactgtgactgctggggtgtcattgcttctgttgcagtgacctttc 320
Query: 121 tgcttcttctacagcctgaatctcagctctcatcaggctgtgaataacaagtaagcagac 180
||||||||||| ||||||||||| ||||||||||| ||||||||||||| ||||||||||
Sbjct: 321 tgcttcttctatagcctgaatcttagctctcatcatgctgtgaataacacgtaagcagac 380
Query: 181 agtgcacaggagatgcccaacaccactgccactttatattttgtaagtggatcattttgc 240
||| |||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 agtacacaggagatacccagcaccactgccaatttatattttgtaagtggatcattttgc 440
Query: 241 tgcacacttaatggaaatatattctgtctgttattggaaatgtgaatacctagtgaagtt 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 tgcacacttaatggaaatatattctgtctgttattggaaatgtgaatacccagtgaagtt 500
Query: 301 ccggtatgatttcccttctgatgccactactttattatgaacatataagattcttatttt 360
| ||||||||||| ||||||||| |||||||||||||||||||| || ||||||||||||
Sbjct: 501 ctggtatgatttctcttctgatgtcactactttattatgaacatctaggattcttatttt 560
Query: 361 catattgatcacttcttgacaacatggttggccttggacatatcattgatcaatttctac 420
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 561 catattgatcacttcttgacaatatggttggccttggacatatcattgatcaatttctac 620
Query: 421 actcaacaaaaaaaggtcatgtatttcatgcaaatagtggaaattacaacttacatttca 480
| |||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 621 attcaacaaagaaaggtcatgtatttcatgcaaatagtg-aaattaaaacttacatttca 679
Query: 481 aaaa-tgcttttgtttccctctaa 503
|||| ||| |||| ||||||||||
Sbjct: 680 aaaaatgcctttgcttccctctaa 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
