BAC Information

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BAC

Clone NameMSMg01-460F06
Chromosome16 (Build37)
Map Location 15,067,327 - 15,067,841
singlet/doubletsinglet
Overlap geneLOC100042737
Upstream gene2900011O08Rik, 4921513D23Rik, Nde1, Myh11, 0610037P05Rik, Abcc1, Gm1758, Snai2, Efcab1
Downstream geneLOC665653, LOC385748, LOC100042743, LOC547302, EG632352, Ube2v2, LOC665682, Mcm4, Prkdc, 2410018G20Rik, Cebpd, 2310008H04Rik, LOC100043266
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460F06.T7 (MSMg01no460_f06.b1)MSMg01-460F06.TJ (MSMg01no460_f06.g1)
ACCAG545711AG545712
length718764
length of high quality
(start - end)
536 (39 - 574)185 (71 - 255)
definitionCHROMAT_FILE: MSMg01no460_f06.b1 PHD_FILE: MSMg01no460_f06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:32 2005CHROMAT_FILE: MSMg01no460_f06.g1 PHD_FILE: MSMg01no460_f06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCT
CATTTTCCAAATTTCTAACAAGTTCTTGGTCCTAACAGAAGTTTGAGGAA
ACTAGAATGTGGGTGATAATCAGAGCCACCTTCGGACATCCTATTGGAAC
TTGAGGAAACTTCAGTGGTAGCTGCTTTCTTGTGATTTTTCTATGTATCT
GATCCAGGTCCTAGGGAGAGAAGGTGTGAGCTTTCTAGGACAAGTGGACC
CCTTCCACCAACTACTAAGGAGACACTGCCCTCTAAGACATAAGAACAAC
CAATGCTGTCTGAGGCTGGAACTGCTCAGTGTATAAGTGAGTAACTTCTT
GGTTTTCCTGTGTTCAAAGCCAACTTCACAAGACTGTAAGATGCATATTA
TAATCATCACATAGAAAAGTGACTCTCAACTTTCTTAATATTGTGACCCT
CTAATTCAGTTCCTCATGTTGTAGTGACCTCCAACCATAAAATAATTTTC
ATTGCTACTTCATAACTATAATGTTGCTACTATTTTGGGTCACAATGTAA
ATATCTGATATGCAACCCCTATAAAGAGGTTGTTCAATCCCCAAAGGGGT
CATAACTCTCAGGTTGAGAAATACTGATTTAGTGAATAAGACATTTGAAG
TAGCTAACTGCTTTGCCCCCGGTTGCCAAGGTCAGAAAAGTTTCTTTTCT
TTTTTTCTCTTACAAAAG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAAGAAAATGAAGGCACAGCATACACAAAT
TCATGGGACACAATGAAAGCAGTGCTAAGAGGAAAGTTAATAGCACTAAA
TGTCTTTATAAACTAGAGAATTTTCACACTAGTAATTTAAAAGTATACTT
GAAAGCTCTAGAAAGAAGAAAGAAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGCCNCCCCNCNNCCGCCGNCCCGCCCCGGCGCGCGGGGCGCNGGGGGCC
GGGGGGGGGGGTTTGGGCGGGGGGGGGGGGGCCGGGCGCGCCGCGGGCGC
CGGGGCGCGGTGCTGTGGCCCGCGGGGCCGCCCCGCCTCCGGCCGCGGTC
GTTGTGTTTTTGCGTCCTCGGGTGTGGCGGCGTCGGTTGTTTGGTTGGGC
GGGGCCGTTGTCTCCTTGGCTCGCCTTTTGTTTGTCGCGGCTTTTTTTGC
GCGTTGTTCTCCTCGGTTTTTTCCCTTTTGCTCTCCTGTTTCGCCGGGGC
TCTTGCTGGTGGTCCGTCCTTTTGCCCTCTTTGCCTTCCTCCCTTTCCTC
GTGCTTTCCTCTGCTTTGGGCCTTGCTGGTGTTTCGTGTCTGTCCCGCCT
TCTCCGCCTTGTCGGCCTCCCCGCTCTTTTTTTGTTCCTTTCCCGCGCTT
CCCCTTTTTTTTTTTGCCTCCGCGGTGTCTCTCGTTTTTCGCCCCCCGCC
CTTTATTCCTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_f06.b1 MSMg01no460_f06.b1 CHROMAT_FILE:
MSMg01no460_f06.b1 PHD_FILE: MSMg01no460_f06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:32 2005
         (536 letters)



>mm_chr16_15067107_15068041
          Length = 935

 Score =  959 bits (496), Expect = 0.0
 Identities = 511/516 (99%), Gaps = 1/516 (0%)
 Strand = Plus / Plus

                                                                       
Query: 21  aaatttctaacaagttcttggtcctaacagaagtttgaggaaactagaatgtgggtgata 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 aaatttctaacaagttcttggtcctaacagaagtttgaggaaactagaatgtgggtgata 280

                                                                       
Query: 81  atcagagccaccttcggacatcctattggaacttgaggaaacttcagtggtagctgcttt 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 atcagagccaccttcggacatcctattggaacttgaggaaacttcagtggtagctgcttt 340

                                                                       
Query: 141 cttgtgatttttctatgtatctgatccaggtcctagggagagaaggtgtgagctttctag 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 cttgtgatttttctatgtatctgatccaggtcctagggagagaaggtgtgagctttctag 400

                                                                       
Query: 201 gacaagtggaccccttccaccaactactaaggagacactgccctctaagacataagaaca 260
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gacaagtgggccccttccaccaactactaaggagacactgccctctaagacataagaaca 460

                                                                       
Query: 261 accaatgctgtctgaggctggaactgctcagtgtataagtgagtaacttcttggttttcc 320
           |||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 461 accaatgctg-cagaggctggaactgctcagtgtataagtcagtaacttcttggttttcc 519

                                                                       
Query: 321 tgtgttcaaagccaacttcacaagactgtaagatgcatattataatcatcacatagaaaa 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tgtgttcaaagccaacttcacaagactgtaagatgcatattataatcatcacatagaaaa 579

                                                                       
Query: 381 gtgactctcaactttcttaatattgtgaccctctaattcagttcctcatgttgtagtgac 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 gtgactctcaactttcttaatattgtgaccctctaattcagttcctcatgttgtagtgac 639

                                                                       
Query: 441 ctccaaccataaaataattttcattgctacttcataactataatgttgctactattttgg 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 640 ctccaaccataaaataattttcattgctacttcataactataatgttgctactgttttgg 699

                                               
Query: 501 gtcacaatgtaaatatctgatatgcaacccctataa 536
           ||||||||||||||||||||||||||||||||||||
Sbjct: 700 gtcacaatgtaaatatctgatatgcaacccctataa 735


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 935
Length adjustment: 10
Effective length of query: 526
Effective length of database: 925
Effective search space:   486550
Effective search space used:   486550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)