BAC Information

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BAC

Clone NameMSMg01-460I20
Chromosome16 (Build37)
Map Location 91,860,793 - 91,860,902
singlet/doubletsinglet
Overlap geneItsn1
Upstream gene4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2, Olig1, Ifnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653
Downstream geneAtp5o, Mrps6, Slc5a3, Kcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik, Clic6, Runx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460I20.T7 (MSMg01no460_i20.b1)MSMg01-460I20.TJ (MSMg01no460_i20.g1)
ACCAG545883AG545884
length754821
length of high quality
(start - end)
114 (44 - 157)---
definitionCHROMAT_FILE: MSMg01no460_i20.b1 PHD_FILE: MSMg01no460_i20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:50 2005CHROMAT_FILE: MSMg01no460_i20.g1 PHD_FILE: MSMg01no460_i20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTCCCTGACACCCATGGAACTTTAACCCAGCTGAGTCAGCCAGCCGA
GACCACGGGAGCCAGGACAGGGGCCAGCATGCACTCTGTGGGACAAAGTG
GCTTATTGTCAATTAATGGCTTCCCTTGAGTGCCTACCCTTGTNAGTAAT
TAGTATCATGAANNNNNNNNAACAAAGGTTTAACNACNCAACAAACATNN
NNCCCGGGAAAGATAAAATGTGCAAGTGGAACCGACTTTTATATAATTGT
TGCTTTCTCCTTTACTGGANACTCAAGGGCTTATTAAAACTAAGAAGTNN
NTAAGGGAAATTTGTTCAATGGGGTGGGGGTTGTCAAACCCCTTTTTTTC
TANNNNNNATAAAAANNAAAAAAGGGCTTTGTTTTTTTTCAACGNNGCGG
TGTTTAAAAAAACTAGGGGGGGGGGGAGGGGGGCTGGGGTGGGATAAATC
GCGGAGAGNAATTCCAAAGTTCTCCCCCAAAAAAAAAAAAACAGGGGTGT
TTCTCCCCCCAAAAAAAACACGGGGGGGTTCTTTGTGNTTTAAAAAAACC
CCCCACAAAAAAAAAAAANGCCCCCGTGGAGGTATAAAAAAAGAGGCGCG
GCTCCAAAAAAAAAAAAAAGAGGNNAAAAAAAAAAGGTTTGANGGGGTGG
TGTGGTAATTATGTTTGGAGAGTTCGGGGGGGGGGGGGGGGGGGGTGGGG
TGTT
TACAANTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCCACTTGAGGCTTCATGTCAATCTTCA
AAGCGTTTCAGATGATCTTGTTAGATGNCAGGGTTTCAGATCAGGAATCA
ACTGGGCACAGTAGGATATGAAAGGGCCTTAAAGCTGGGTGGAAAAGANN
AAGGATTGAATNNNATNNNTGAGGCATGNCAAGAAAAATGGCGCTGNNTT
TGTGGATTAGTGGGTAGAGCTGGGGGGTGGGGTGTTTTGGGTGTGTGGGT
TTTTGTTGTTTTGTGGGGTGTGGGGGGGCTGGGGGGGGGGGGGGGGGGGG
GGCGGGGGGGGGGGGGGGGGGCGGAGGGGGGGGGCTAACTAAAGGGAGTG
CCGCTGGNNAATTAGGGGGGGGGGGGGTGGGGGGTGGGGGGGGGGGGGGG
CTGGGGGGGGAGGGGTGGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGA
GGGGGGGGGNACTGAGGGGGTTTTGANNNATTTTGGGGGGGGGGGGGGGG
GGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGTGAGGGGGGGGGGGGGGGG
GGGGGGGGGGGGCTNCGNNNNNNNNNNNNNNAANAANAAANNAANAAAAG
GAGGTGGGAGGGGAGGGANNTTCTGNNNNNNNNNNNNAANNNANANANAN
NNNNNAAANNAAAAAAANAAAAAAAANNAAANNNAAANAAAAAAAANNAN
AAAAAAAANAAAAAAAAAAAAAAAAAAAGGAGGGGGGGGAGTTCTGGGGG
GGGGGGGGGTTTTATGTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_i20.b1 MSMg01no460_i20.b1 CHROMAT_FILE:
MSMg01no460_i20.b1 PHD_FILE: MSMg01no460_i20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:50 2005
         (114 letters)



>mm_chr16_91860589_91861102
          Length = 514

 Score =  197 bits (102), Expect = 1e-55
 Identities = 108/110 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctccctgacacccatggaactttaacccagctgagtcagccagccgagaccacg 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gaattcctcccagacacccatggaactttaacccagctgagtcagccagccgagaccacg 255

                                                             
Query: 65  ggagccaggacaggggccagcatgcactctgtgggacaaagtggcttatt 114
           |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 254 ggagccaggacaggggccagcatgcactctgtaggacaaagtggcttatt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 114
Length of database: 514
Length adjustment: 8
Effective length of query: 106
Effective length of database: 506
Effective search space:    53636
Effective search space used:    53636
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)