BAC Information

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BAC

Clone NameMSMg01-463H06
Chromosome16 (Build37)
Map Location 88,400,094 - 88,400,582
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63, Bach1, LOC100039901, Grik1
Downstream geneEG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463H06.T7 (MSMg01no463_h06.b1)MSMg01-463H06.TJ (MSMg01no463_h06.g1)
ACCAG548102AG548103
length742750
length of high quality
(start - end)
249 (74 - 322)487 (80 - 566)
definitionCHROMAT_FILE: MSMg01no463_h06.b1 PHD_FILE: MSMg01no463_h06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:52 2005CHROMAT_FILE: MSMg01no463_h06.g1 PHD_FILE: MSMg01no463_h06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAAAAACTTATCATTCTTGTTTTATAGAGCAATAAATCGAG
AATAAAAATAGCATTTTATATCATCATGACTATTTGCTATAGGTAATATT
GTCTACTTGATAAGATTTGGAGTCATATGAAAGTGAATCTCTGGGTAGGT
CCAGGAGATAGTATCAAGTACTGGGTTGATTGTTGTGAAAAGACCCATCT
GAAACTGGACAGCACCATTTCTCTGGCTGGCATCGAGGGCTTAAACTGCC
AGGACATAGCTAAGCTGGGTGATAATTTATGTCCATCCCACCATCCGTGC
TGACTGTGGTTGCAATGTTGTGACCACTGCCTCCTGTTCCCATGGCTCTC
CCTTTGCCATCCCGGTAGACTGTATTTCCTGGAGCTTTAAATTAAAGTAA
ACCCCTCTTTCCTTGAGGTTAATTTTGTCAGGATTCCATTAGAGAAGAAG
AAGAAGAAGAAAAGAACAGACACTTAAAAAGTTACTACTAAGAAGGGGAT
TGTCACTGTGAAAACAACTGATCATAGAGTTATAAAGCCTTCGGATGGGC
TTTGTGGGAGCAATGTGGAGGTAGAACTTTGAGGGACAACAGTTCTTCTA
TTTTATGTTTAGTTTACGGAGAATTCTTAGTGAATCTTGTAAAAAAGATA
GTTCAGGTTGAAGTCTTACTCATGGTATTTCTTATGAAAAAC
NCCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTCTTTTCTCCCAAGTCAT
CTTCTCATTCTAGCTCAGTTCGAAGCAGTGTTGGGAAACGGTGAGGAACA
AAAACCTGGGGGCCATAGTGCCCACATTTAACCCCCCAGGGTGGGTCACC
TGAAACCAATCTCTCAGACTCAGCTTCTTCTTTTCTAAACTACAAGGGAG
AGCAACAAGTTGGATTAAGCTGTGATGAGAGACAGATGAATGAAAGTGTT
TGGCAGGGTGCCTGGCGGTAGCCAGGTCTGCTTCGATGCTAGATATCATG
AGTAGAGACAGTGGGAAGGAGCAGAGTAAACATAAACATCACTCCTGCCT
GCTGGGTGGCTACAATTTAGCAAAATAACTGATTGCATCCTTAACAGCCT
ATCATGAGTCAGTAAGAGGAAGGAAAACCATGTGCTTTTTTGGAACTGAA
TATTTAGAATAGAGTGCCTGCGAGTATATGCACATTAGAGTAAAAAAAAC
TAAAGTGTGTTGTTGTAGAGGTATGCATCAACAGAAATGAACTGAACAGG
CGTTCAGGGATTGCTCTCAGGTTACCATTTTGAAAAATTAAGTCTTAAAA
TTTACTACCAATGATAGTGAACCTGTAGCAAGAATCATTGTACTATAATG
GCGCGGCTTGGTTGAGCTGTGTCATTTTACCCCATTTGTATATATAGGGG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_h06.g1 MSMg01no463_h06.g1 CHROMAT_FILE:
MSMg01no463_h06.g1 PHD_FILE: MSMg01no463_h06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:52 2005
         (487 letters)



>mm_chr16_88399894_88400779
          Length = 886

 Score =  847 bits (438), Expect = 0.0
 Identities = 477/492 (96%), Gaps = 8/492 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttcttttctcccaagtcatcttctcattctagctcagttcgaagcagtgttgggaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 ctttcttttctcccaagtcatcttctcattctagctcagttcgaagcagtgttgggaaat 260

                                                                       
Query: 61  ggtgagga--acaaaaacctgggggccatagtgcccacatttaa-ccccccagggtgggt 117
           || |||||   |  |||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 ggagaggagtgc--aaacct-ggggccatagtgcccacatttaacccccccagggtgggt 317

                                                                       
Query: 118 cacctgaaaccaatctctcagactcagcttcttcttttctaaactacaagggagagcaac 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 cacctgaaaccaatctctcagactcagcttcttcttttctaaactacaagggagagcaac 377

                                                                       
Query: 178 aagttggattaagctgtgatgagagacagatgaatgaaagtgtttggcagggtgcctggc 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aagttggattaagctgtgatgagagacagatgaatgaaagtgtttggcagggtgcctggc 437

                                                                       
Query: 238 ggtagccaggtctgcttcgatgctagatatcatgagtagagacagtgggaaggagcagag 297
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ggtagccagggctgcttcgatgctagatatcatgagtagagacagtgggaaggagcagag 497

                                                                       
Query: 298 t--aaacataaacatcactcctgcctgctgggtggctacaatttagcaaaataactgatt 355
           |  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tgcaaacataaatatcactcctgcctgctgggtggctacaatttagcaaaataactgatt 557

                                                                       
Query: 356 gcatccttaacagcctatcatgagtcagtaagaggaaggaaaaccatgtgcttttttgga 415
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 558 gcatccttaacagcctatcatgagttagtaagaggaaggaaaaccatgtgcttttttgga 617

                                                                       
Query: 416 actgaatatttagaatagagtgcctgcgagtatatgcacattagagtaaaaaaaactaaa 475
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 618 actgaatatttagaatagagtccctgcgagtatatgcacattagagtaaaaaaaactaaa 677

                       
Query: 476 gtgtgttgttgt 487
           ||||||||||||
Sbjct: 678 gtgtgttgttgt 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 886
Length adjustment: 10
Effective length of query: 477
Effective length of database: 876
Effective search space:   417852
Effective search space used:   417852
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)