BAC Information

Click to search

BAC

Clone NameMSMg01-463H20
Chromosome16 (Build37)
Map Location 17,555,019 - 17,555,527
singlet/doubletsinglet
Overlap gene4930451C15Rik
Upstream geneFgd4, Olfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7
Downstream geneP2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463H20.T7 (MSMg01no463_h20.b1)MSMg01-463H20.TJ (MSMg01no463_h20.g1)
ACCAG548130AG548131
length749745
length of high quality
(start - end)		616 (81 - 696)501 (79 - 579)
definitionCHROMAT_FILE: MSMg01no463_h20.b1 PHD_FILE: MSMg01no463_h20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:55 2005CHROMAT_FILE: MSMg01no463_h20.g1 PHD_FILE: MSMg01no463_h20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTGATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCG
CGCGGAATCACTATAGCTCCCAAACAGACTTCAGTCTTCTGTATGCTCGG
ATAACAGGAATGGACCACTACAACAACCCCTCTGAGCACTTCAAACCAGC
TTCTCTTCTCTAGCAGCCAAGAAAATGAGAAGAGGCCAAACTTTATTCCC
AAGGGACTCCAGTCTGGCCACAGAGATCAGCTAGGCAGCATAAGGGGAGG
CCTTAGGGGTCACAAGGCTAGATTAGTGTGGGAAGATGGAACAACAGTAA
ACATGGCTTGAGGGAGCCCACCTAGCTAGGACAAAGTCTGCAAACCCAGG
TTATGAGGCTGAGCCCTGGCTGGCCAGGCGGAGAACAGGGTACTGTGGGG
CAATGGGCTATGTGTTTCCAGTTGAGCTGAGGTCTTGAACCCCAGTGGTA
CCCAGCGGTGGTAATTTTCACCTACATGGGACAGAAGGCATTCCCTCATG
TCTCCTGGACCCCTGGCTCCTGTTGAAGTTACCAACCCCACAGCCCCCAC
AGGAGAGGCTCGTGGCGTTCAGACACGTAGACAATGTCCAAAGCTTCTGG
CCTTCTGGCTAGATTCCTCCCCACAGTTACCTAGCAACAGCAAGATAACA
AGCCCACTATAAGAGGGGCTGTTTGGCCCCACCTCGCTCTCTTAAGCTTT
TACTTTCCTTAATGGCTCTCTCTAAAGTTTTACTTCTCTCTCTAAGGCN

NTTCACGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATGACCTCTACAGAACAGCAAG
TGTTCTTATCCACTGAACCATCCTTCCATCTTCTTGCCCTGTTTTGGAAT
TGAGAAATAAAGGCCAGACCACCAATCCTTGAGGGGTGTACTGGCTAGTT
TTGTGTCAACTTGACACAGTTGGAGTTATCACAGAGAAAGGAGCTTCAGT
TGAGGAAATGCCTCCATGAGATCCAACTGTAAGGCATTTTCTCAATTAGT
GATCAAGGGGGAAAGGCCCCTTGGTTTTGTTACCATCTCTGGGCTGGTAG
TCTTGGGTTCTATAAGAGAGCAGGCTGAGCAAGCCAGGGGAAGCAAGCCA
GTAAAGAACATCCCTCCATGGCCTCTGCATCAGCTCCTGCTTCCTGACCT
GTTTGAGTTCCAGTCCTGACTTCCTTGGTGATAAACAGCAGTATGGAATT
GTAAGCTGAATAAACCCTTTCCTCCCCAACTTGCTTCTTGGTCATGATGT
TTGTGCAGGAATAGAAACCCTGACTAAGACAAGGGGCAAGGTGCCTCAAA
TCAAAAGCTCAGATATGATACTATTTTTTTTAAATCCAGACTATTAAACT
TAATCTGGATGTTATATAAGAGGGCCGAATTATACCTTTTCCAATCTGAG
AGATAAGTTTAATGCCCCCATGGTTTCCTCAAAAAGTTTTTGCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_h20.b1 MSMg01no463_h20.b1 CHROMAT_FILE:
MSMg01no463_h20.b1 PHD_FILE: MSMg01no463_h20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:55 2005
         (616 letters)



>mm_chr16_17555017_17556034
          Length = 1018

 Score =  818 bits (423), Expect = 0.0
 Identities = 482/509 (94%), Gaps = 14/509 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagtcttctgtatgctcggataacaggaatggaccactacaacaacccctctgagcact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tcagtcttctgtatgctcggataacaggaatggaccactacaacaacccctctgagcact 452

                                                                       
Query: 61  tcaaaccagcttctcttctctagcagccaagaaaatgagaagaggccaaactttattccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tcaaaccagcttctcttctctagcagccaagaaaatgagaagaggccaaactttattccc 392

                                                                       
Query: 121 aagggactccagtctggccacagagatcagctaggcagcataaggggaggccttaggggt 180
           ||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 391 aagggactccattctggccacagagatcagccaggcagcgtaaggggaggccttaggggt 332

                                                                       
Query: 181 cacaaggctagattagtgtgggaagatggaacaacagtaaacatggctt--gagggagcc 238
           ||||||||||||||||||||||||||| |||  ||||||||||||||||  |||||||||
Sbjct: 331 cacaaggctagattagtgtgggaagatagaatgacagtaaacatggcttctgagggagcc 272

                                                                       
Query: 239 cacctagctaggacaaagtctgcaaacccaggttatgaggctgagccctggctggccagg 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 cacctagctaggacaaagtctgcaaacccaggttatgaggctgagccctggctggccagg 212

                                                                       
Query: 299 cggagaacagggtactgtggggcaatgggctatg-----------tg-tttccagttgag 346
           ||||||||||| |||||||||| |||||||||||           || ||||||||||||
Sbjct: 211 cggagaacaggatactgtggggaaatgggctatgcacagacagcctggtttccagttgag 152

                                                                       
Query: 347 ctgaggtcttgaaccccagtggtacccagcggtggtaattttcacctacatgggacagaa 406
           ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 151 ctgaggtcttgaaccccagtggtgcccagtggtggtaattttcacctacatgggacagaa 92

                                                                       
Query: 407 ggcattccctcatgtctcctggacccctggctcctgttgaagttaccaaccccacagccc 466
           ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 91  ggcgttccctcatgtctcatggacccctggctcctgttgaagttaccaaccccacagccc 32

                                        
Query: 467 ccacaggagaggctcgtggcgttcagaca 495
           ||||||||||||||||||| |||||||||
Sbjct: 31  ccacaggagaggctcgtggagttcagaca 3


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1018
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1008
Effective search space:   610848
Effective search space used:   610848
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |