Query= MSMg01no463_j08.b1 MSMg01no463_j08.b1 CHROMAT_FILE:
MSMg01no463_j08.b1 PHD_FILE: MSMg01no463_j08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:03 2005
(507 letters)
>mm_chr16_95802591_95803496
Length = 906
Score = 888 bits (459), Expect = 0.0
Identities = 493/505 (97%), Gaps = 7/505 (1%)
Strand = Plus / Plus
Query: 6 gaattctgtccagttc-ctt-cttcgggtcccggaaggccctgtcacagctaagcctgtc 63
||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctgtccag--cgctttcttcgggtcccggaaggccctgtcacagctaagcctgtc 263
Query: 64 acatcagctttctggggtccaacggcatcactgacaaaagcccaattcttcagttagtaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 264 acatcagctttctggggtccaacggcatcactgacaaaagcccaattcttcagttaggaa 323
Query: 124 atgggaacctggtttcctttcccagtcacatgtacctctgcctaggagtggtggcagatg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atgggaacctggtttcctttcccagtcacatgtacctctgcctaggagtggtggcagatg 383
Query: 184 gacagacctcaggcagtcctgtggaacctgcctgtctggagaggtttctgttcagtacag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gacagacctcaggcagtcctgtggaacctgcctgtctggagaggtttctgttcagtacag 443
Query: 244 tctctgacccccaagataccagggagccagggctctctctcctctgctctaagccccagc 303
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 444 tctctgacccccaagataccagggagccagggctctccctcctctgctctaagccccagc 503
Query: 304 ctcaacaaacaccatcaccaagaaggactgctttgcagaagccctgggaggagggatgga 363
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctcaacaaacaccgtcaccaagaaggactgctttgcagaagccctgggaggagggatgga 563
Query: 364 cccaagaggctgcatctcccctaccat-tggcccccgccccttctttggccagagatcta 422
|||||||||||||||||||| |||||| || |||| ||||||||||||||||||||||||
Sbjct: 564 cccaagaggctgcatctccc-taccatctg-cccctgccccttctttggccagagatcta 621
Query: 423 gcagaaaagagccactggatctcaggtatagaaagtgactataaattctgacgttttagt 482
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 622 gcagaaaagagccactggatctcaggtatagaaagtgactataaattctgaagttttagt 681
Query: 483 agccagactgtgaggcacacaacag 507
|||||||||||||||||||||||||
Sbjct: 682 agccagactgtgaggcacacaacag 706
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 906
Length adjustment: 10
Effective length of query: 497
Effective length of database: 896
Effective search space: 445312
Effective search space used: 445312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no463_j08.g1 MSMg01no463_j08.g1 CHROMAT_FILE:
MSMg01no463_j08.g1 PHD_FILE: MSMg01no463_j08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:03 2005
(537 letters)
>mm_chr16_96003010_96003941
Length = 932
Score = 973 bits (503), Expect = 0.0
Identities = 527/537 (98%), Gaps = 5/537 (0%)
Strand = Plus / Minus
Query: 1 ctaattccagagagtccctactgttttgagccttggggcccatcacaagccacagggtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ctaattccagagagtccctactgttttgagccttggggcccatcacaagccacagggtgg 673
Query: 61 gtctttctgcaatgttctagcttctagaagctctgggggccccagggataagggctattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gtctttctgcaatgttctagcttctagaagctctgggggccccagggataagggctattt 613
Query: 121 atctgttccctctattaggtctgaggagtctcttccagacacacaacagatgacacttca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 atctgttccctctattaggtctgaggagtctcttccagacacacaacagatgacacttca 553
Query: 181 ctgtgtgtgatgtgtcagagccaaccagccacagggacctagagcgcatctgtggaccga 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 552 ctgtgtgtgatgtgtcagagccaaccagccacagggacttagagcgcatctgtggaccga 493
Query: 241 aatatatttttgcttgtttccagtgagtaaccaaaggggaagttatcttaattttgaaag 300
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aatagagacttgcttgtttccagtgagtaaccaaaggggaagttatcttaattttgaaag 433
Query: 301 gaacaaggccagcttcattgtgggtcttttttgtgtgttcttgagtgtcagcacccatat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gaacaaggccagcttcattgtgggtcttttttgtgtgttcttgagtgtcagcacccatat 373
Query: 361 ggatgtcgtcacatccaactccgtgtgtgttctggggacctaaagtctggtctttaccca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggatgtcgtcacatccaactccgtgtgtgttctggggacctaaagtctggtctttaccca 313
Query: 421 ctaatacgtctttcctgtcccccccccctttttttttctggaatgaaatctttcccatta 480
||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 312 ctaatacgtctttcctg----ccccccctttttttt-ctggaatgaaatctttcccatta 258
Query: 481 cccttttctttctaagttcaaggtctttcttttccgactactgctgccttggattgg 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cccttttctttctaagttcaaggtctttcttttccgactactgctgccttggattgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 932
Length adjustment: 10
Effective length of query: 527
Effective length of database: 922
Effective search space: 485894
Effective search space used: 485894
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
