BAC Information

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BAC

Clone NameMSMg01-463K12
Chromosome16 (Build37)
Map Location 96,137,814 - 96,138,053
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnj6, LOC666201, Kcnj15, Erg, Ets2, LOC625548, LOC100040997
Downstream geneDscr2, Brwd1, LOC100041318, Hmgn1, Wrb, 4921526F01Rik, Sh3bgr, B3galt5, Jam4, Itgb2l, Pcp4, Dscam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463K12.T7 (MSMg01no463_k12.b1)MSMg01-463K12.TJ (MSMg01no463_k12.g1)
ACCAG548256AG548257
length733745
length of high quality
(start - end)
242 (88 - 329)347 (86 - 432)
definitionCHROMAT_FILE: MSMg01no463_k12.b1 PHD_FILE: MSMg01no463_k12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:09 2005CHROMAT_FILE: MSMg01no463_k12.g1 PHD_FILE: MSMg01no463_k12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTAATCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTCAGACA
CATGCGCGGAATTCCATACCGTTAACTTATAGCTTCATGCACAAAACATG
GAAAATACTATACAAATCTCCCCTCAAGCTGTATGTGTTAGGTTTATATA
AACACAGCTTCATGGGTAGATTTGCATCCTTCCCTCCATCAAGATATTCA
TCTGTTTTTTATATGATTACTGCAAAACCAAACTCTAAAGTTCAGAACAC
TCTGGTCCCAAGTACTGTGGATATGAGGGATTCAACCTGTGCACACATGC
ATGTGTGTGCACAGAAGCACACGTGTGTTATTGATTAAGATATCATGGGC
AAGCATGCATTAAACATATTACTTAGATAAATCTTTGAAGATAGATAGAA
GCTAGATACATAGACAGATAGACAGACAGATATTGTGTTACTGGAAAAAT
ATATAAATACCCAGCTCACAAAGAAGGAGGGCTTATTTTGACTCACACCC
TCAGAGGCTTCGGTTGGTCAGCTCTGATGCTTGGGGCCTGGGTCAGGACC
ATACGAGGAGGCAGCAGTGTGTGGTGGGGGAGGCTTTCTTGCAAAGCACT
GTCCTCCAAGCCAAGCAACCACCCGTCTTCCAGAAGAAGTTTCGTCTGCT
GTGCTTGTGACTGCTGATATTCTGCATTGGAGTGAGTTTGGGTAAAGCAA
TTGGACCTTCACCTGATAGTCTGAATACTCCTN
NTTTCGCCAATGCTATGTGTAGGCCTGGGGGNCGCCTGGCTTTCAAAAAG
GGGTNGAACTATAGAAGGATCCCAGAAAATCCGAAGTGATAGACCAGCAT
TCAGGCTGCCTTGTGGCCACCGCTTCCTACTCTTCCCCGGGGCTACAACA
AGAGAGCAACAGACAGCAGAAAAACACAAGAAATGTAGGCTTGATGAGGA
AAGGATTCTGAGCACATTTAAAGTTGCAGATAAGGTGGGTGCTACAGATG
CAGTGCAGTTGTTAAAGTGGTTCTCTGGATCTCACACACATATGCCACAG
CTACATACATATACCACCAGACACACTTTTTTATACCACAGACACATACA
CATACCACAGACACATACTCACACACACACACACACCACAGACACACACA
CACACACACACACACACCACAGATACACACACACCACAGACACACACACA
TACCACAGACACACACACATACCACAGACACATACACACACATACCACAG
AACACACACATACCACAGACACACACACATACCACAGACACACACACATT
ACCACAGACACACACACACATACTACAGACATACCCCCACTCAAACACTC
AGGAGTTATCTTCCAGTTCAGGAGGTCCATTATCCATAATAGCTCCCCTT
ACTATACCTATAAATATAATTTTATAAATTAATCATGCCACTTGCAGGAA
TAAGCTTTACTGAAAAAATTGGGCCTTATATAACCCCCATTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_k12.b1 MSMg01no463_k12.b1 CHROMAT_FILE:
MSMg01no463_k12.b1 PHD_FILE: MSMg01no463_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:09 2005
         (242 letters)



>mm_chr16_96137614_96138255
          Length = 642

 Score =  449 bits (232), Expect = e-131
 Identities = 238/240 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcacaaaacatggaaaatactatacaaatctcccctcaagctgtatgtgttaggtttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcacaaaacatggaaaatactatacaaatctcccctcaagctgtatgtgttaggtttat 260

                                                                       
Query: 61  ataaacacagcttcatgggtagatttgcatccttccctccatcaagatattcatctgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaacacagcttcatgggtagatttgcatccttccctccatcaagatattcatctgttt 320

                                                                       
Query: 121 tttatatgattactgcaaaaccaaactctaaagttcagaacactctggtcccaagtactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 tttatatgattactgcaaaaccaaactctaaagttcagaacactctggtcccaagcactg 380

                                                                       
Query: 181 tggatatgagggattcaacctgtgcacacatgcatgtgtgtgcacagaagcacacgtgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 tggatatgagggattcaacctgtgcacacatgcatgtgtgtgcacagaagcacacatgtg 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)