BAC Information

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BAC

Clone NameMSMg01-464H22
Chromosome16 (Build37)
Map Location 59,317,023 - 59,317,510
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043477, Dcbld2, St3gal6, LOC100043480, Gm813, E330017A01Rik, Cpox, LOC100043790, Gpr15, Cldnd1, Olfr172, Olfr173, Olfr174, Olfr178, Olfr180, Olfr1563-ps1, Olfr181, Olfr182-ps1, Olfr183, Olfr185-ps1, Olfr186, Olfr187, Olfr188-ps1, Olfr189-ps1, Olfr190, Olfr191, Olfr192, Olfr193, Olfr1540-ps1, Olfr194, Olfr195, Olfr196, Olfr197, Olfr198, Olfr199, Olfr200-ps1, Olfr201, Olfr202, Olfr203, Olfr204
Downstream geneOlfr205, GA_x5J8B7U0478-6-340, Olfr206, Olfr207, Gabrr3, LOC100043803, Mina, BC043118, LOC672884, Arl6, Epha6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464H22.T7 (MSMg01no464_h22.b1)MSMg01-464H22.TJ (MSMg01no464_h22.g1)
ACCAG548897AG548898
length764783
length of high quality
(start - end)
546 (73 - 618)488 (75 - 562)
definitionCHROMAT_FILE: MSMg01no464_h22.b1 PHD_FILE: MSMg01no464_h22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:17 2005CHROMAT_FILE: MSMg01no464_h22.g1 PHD_FILE: MSMg01no464_h22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAACCGCGGAAT
TCTCTTCTGATTACACCAAATGGCCGAGAAGCACCGGAATAAATGTTCAA
CATCCTTAATCATCAGGGAAATGCAAATCAAAGCAACCCTGAGATTCCAC
CTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATG
CTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGT
GCAAGCTTGTACAACCACTTCGGAAATCAGTCTGGCGGTTCCTCAGAAAA
CTGGACATAGTATTACCATAGGTTTCTGCAATACCTCTCCTGGGCATATA
TCCAGAAGATGTTTCAACCGGTAAGGACAAATGCTCCATTATGTTCATAG
AAGACTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCA
ACAGAGGAATGGATACAGAAAATGTGGTATATTTACACAATGGAGTACTA
CTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGAATGG
ACCTGGAGGGCATCATCCTGATTGAGGTAACCCAATCACAAAGGAACTCA
CACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACGTAGGATA
CCCTAGATATATTATACCATTTGCTTAACCCATGAAACTTCAGAAGAACG
AAGACCAACGTGGTAAACTTTTGCCCCTTCCTGAAATTGGCAACAATACC
CCCTGTTATGAGTN
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCGTGGGCATCCTGGGAATATGAAGAG
AGGAAGATTCCCCTACAACAACAGTATCTGTTTCATGTTAAATGTTTGAC
CAATATCAAACTAATGTTGTATTATGGTTTTATATAAGACATAGGGACAT
TTAATATTTTTTCCACAGTTTATATGCTGTTCTGCTAATGTTTCATTATA
TAATAAAACTCTAAGCAAATATCATGTTTCCTAGTCTCAGAAATGATGAA
AGAGAACAAATTTAACAGAATATTTTTTTTATTTAGTTGAAATGAATAAG
CATGAAATACCCTCTGCCTCTTTCAATATAATATTTCAGATCTTCTACAT
ATTTTATTGCCTCAAGAAAATTCCTTGCCTATTCTTCTATAGATTTCTCA
TTTAAATGTGTTTTACAAAAATAAAGCAGATGATTTGAGAAAACTAATTC
ATTAGTATCAGAGATATGGGCATGGGGCAGTTACTAATTCTATGCAGAAT
TACATACTAAGATTTGAAAAATTAAGCAAGTATGTTGGTAGGAAACCCAT
CGGACAATCTTTTGTTTCAGACTTTATGGTAGAGAAAAAAATTTGTATTT
CTAAGCGATCACCTTCAATTTTAAGTCATCAACGTAGGGAAACAAGTATT
CTAACTACCTTTAGCCCCCAATTATGCCCATTTTTTATTCCCCAAAATAG
CTTGGGTCTTAATTTGAAAGCGCCTCTGCTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_h22.g1 MSMg01no464_h22.g1 CHROMAT_FILE:
MSMg01no464_h22.g1 PHD_FILE: MSMg01no464_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:17 2005
         (488 letters)



>mm_chr16_59316823_59317710
          Length = 888

 Score =  936 bits (484), Expect = 0.0
 Identities = 487/488 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgtgggcatcctgggaatatgaagagaggaagattcccctacaacaacagtatctgtttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 cgtgggcatcctgggaatatgaagagaggaagattcccctacaacaacagtatctgtttc 629

                                                                       
Query: 61  atgttaaatgtttgaccaatatcaaactaatgttgtattatggttttatataagacatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 atgttaaatgtttgaccaatatcaaactaatgttgtattatggttttatataagacatag 569

                                                                       
Query: 121 ggacatttaatattttttccacagtttatatgctgttctgctaatgtttcattatataat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ggacatttaatattttttccacagtttatatgctgttctgctaatgtttcattatataat 509

                                                                       
Query: 181 aaaactctaagcaaatatcatgtttcctagtctcagaaatgatgaaagagaacaaattta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 508 aaaactctaagcaaatatcatgtttcctagtctcagaaatgatgaaagagaacaaatttc 449

                                                                       
Query: 241 acagaatattttttttatttagttgaaatgaataagcatgaaataccctctgcctctttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 acagaatattttttttatttagttgaaatgaataagcatgaaataccctctgcctctttc 389

                                                                       
Query: 301 aatataatatttcagatcttctacatattttattgcctcaagaaaattccttgcctattc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aatataatatttcagatcttctacatattttattgcctcaagaaaattccttgcctattc 329

                                                                       
Query: 361 ttctatagatttctcatttaaatgtgttttacaaaaataaagcagatgatttgagaaaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ttctatagatttctcatttaaatgtgttttacaaaaataaagcagatgatttgagaaaac 269

                                                                       
Query: 421 taattcattagtatcagagatatgggcatggggcagttactaattctatgcagaattaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 taattcattagtatcagagatatgggcatggggcagttactaattctatgcagaattaca 209

                   
Query: 481 tactaaga 488
           ||||||||
Sbjct: 208 tactaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)