BAC Information

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BAC

Clone NameMSMg01-465A17
Chromosome16 (Build37)
Map Location 58,376,835 - 58,377,283
singlet/doubletsinglet
Overlap geneLOC100043477
Upstream gene2610528E23Rik, 4631422O05Rik, Col8a1, LOC435480, LOC629342
Downstream geneDcbld2, St3gal6, LOC100043480, Gm813, E330017A01Rik, Cpox, LOC100043790, Gpr15, Cldnd1, Olfr172, Olfr173, Olfr174, Olfr178, Olfr180, Olfr1563-ps1, Olfr181, Olfr182-ps1, Olfr183, Olfr185-ps1, Olfr186, Olfr187, Olfr188-ps1, Olfr189-ps1, Olfr190, Olfr191, Olfr192, Olfr193, Olfr1540-ps1, Olfr194, Olfr195, Olfr196, Olfr197, Olfr198, Olfr199, Olfr200-ps1, Olfr201, Olfr202, Olfr203, Olfr204, Olfr205, GA_x5J8B7U0478-6-340, Olfr206, Olfr207
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465A17.T7 (MSMg01no465_a17.b1)MSMg01-465A17.TJ (MSMg01no465_a17.g1)
ACCAG549317AG549318
length767758
length of high quality
(start - end)		492 (36 - 527)450 (67 - 516)
definitionCHROMAT_FILE: MSMg01no465_a17.b1 PHD_FILE: MSMg01no465_a17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:00 2005CHROMAT_FILE: MSMg01no465_a17.g1 PHD_FILE: MSMg01no465_a17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGT
TTCCTTCTGAGCCCCATTTTTAATGGGGTTATTTGATTTTCTGAAGTCCA
CCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTA
GGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATT
GACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATT
TGTCAATTCTCAATCTTACAGCACAAGACATTGCTGTTCTGTTCAGGAAT
TTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACCCTCTCCTCTAT
AAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGATT
TGACCTTAGTACAAGGAGATAAGTATGGATCAATTCGCAATCTTCTACAT
GATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTCTT
CCACTGGATGGTTTTAGCTCCCTTGTCGAAGACAAGTGACCATAGGTGTG
TGGGTTCATTTCTGGGGCCTTCATTCTATTCCATTGGGCCACTTGGCTAT
CTCTATAACAGGACCATGCGGTTTTTATCCCATTGGTCCGGAGTAAAGCT
TTATGCCAGGCTGGGGGATTCCCCCCAAGTTCTTTTTTCCTTGACAAAAA
TTTTTGTTCCCCAGTTTTTTGTGTTCCCGAAGAATTGGAAATGGCTCCCC
TTATTCGTGAAAAAAGN

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAGTCCTGCCTCTACGAACTTACTAACGTCGGTA
AGAAGGTGTTACTAGTTGCTTCAATGTGTGTCATTTCTCTGCAAGGAAAA
TATGTCTGATTGAAAGTGAACTCTTCCTTCTTCCGAATAAGGTGGACGGA
ATCAAAGGATCCTGGAATTTGTATATATAGCCATCGTATTGTAATAACTG
AGATGAGAAGAACCGGTGCCTGAAATATCAACATCACCAGCTTAATTGTA
TTCACAGAGGAAAAGCAAAGGGAATTTGAAACTTTTCTAGAAGATTCCAG
AGTGCATGCTATCAGGTGATTTTTTTTTCTGAAATCTTTTTACTGACAAA
TGTAAACACAATGAAAATGACAAGCCCACATTGTCTCATATTTCTTTACT
GATTGTGTGAGAATGCAAAAGGTACAAGTTTATAGAAAATTCATTTCTGA
CCAAATCCTAAATGGGGAATACTGAAAAGAAGGTACCATCTATGGATATT
AAGTAAAATAATCCTTTGATGATTAACCGGGGACCAGTAGCCCAAAATAA
AAGAGTTAAGCACTTTTAATGTGCTTTTAAGAACCTGAAAAAGGTTCCAC
TAGTTTAAAAAAATTTTTTAGGAATAAAAAAAGGGTCCTTTGTAAAAAAC
CTGTTGTTCTTCTCAGTTCTGGGTGAACCCCCCCACCCCAATTTTCTTAT
ATCTTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_a17.g1 MSMg01no465_a17.g1 CHROMAT_FILE:
MSMg01no465_a17.g1 PHD_FILE: MSMg01no465_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:00 2005
         (450 letters)



>mm_chr16_58376635_58377486
          Length = 852

 Score =  818 bits (423), Expect = 0.0
 Identities = 442/449 (98%), Gaps = 2/449 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtcctgcctctacgaacttactaacgtcggtaagaaggtgttactagttgcttcaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 cagtcctgcctctacgaacttactaacgtcggtaagaaggtgttactagttgcttcaatg 590

                                                                       
Query: 61  tgtgtcatttctctgcaaggaaaatatgtctgattgaaagtgaactcttccttcttccga 120
           |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 589 tgtgtcatttctctgcaaggaaaatacgtctgattgaaagtgaactcttccttcttccaa 530

                                                                       
Query: 121 ataaggtggacggaatcaaaggatcctggaatttgtatatatagccatcgtattgtaata 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ataaggtggatggaatcaaaggatcctggaatttgtatatatagccatcgtattgtaata 470

                                                                       
Query: 181 actgagatgagaagaaccggtgcctgaaatatcaacatcaccagcttaattgtattcaca 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 469 actgagatgagaagaaccggtgcctgaaataccaacatcaccagcttaattgtattcaca 410

                                                                       
Query: 241 gaggaaaagcaaagggaatttgaaacttttctagaagattccagagtgcatgctatcagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gaggaaaagcaaagggaatttgaaacttttctagaagattccagagtgcatgctatcagg 350

                                                                       
Query: 301 tga--tttttttttctgaaatctttttactgacaaatgtaaacacaatgaaaatgacaag 358
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tgatttttttttttctgaaatctttttactgacaaatgtaaacacaatgaaaatgacaag 290

                                                                       
Query: 359 cccacattgtctcatatttctttactgattgtgtgagaatgcaaaaggtacaagtttata 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 cccacattgtctcatatttctttactgattgtgtgagaatgcaaaaggtacaagtttata 230

                                        
Query: 419 gaaaattcatttctgaccaaatcctaaat 447
           |||||||||||||||| ||||||||||||
Sbjct: 229 gaaaattcatttctgatcaaatcctaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 852
Length adjustment: 10
Effective length of query: 440
Effective length of database: 842
Effective search space:   370480
Effective search space used:   370480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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