BAC Information

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BAC

Clone NameMSMg01-465N06
Chromosome16 (Build37)
Map Location 52,696,809 - 52,697,111
singlet/doubletsinglet
Overlap genenone
Upstream geneCblb, Alcam
Downstream geneLOC100043430, LOC667895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465N06.T7 (MSMg01no465_n06.b1)MSMg01-465N06.TJ (MSMg01no465_n06.g1)
ACCAG549917AG549918
length7811,067
length of high quality
(start - end)
350 (41 - 390)---
definitionCHROMAT_FILE: MSMg01no465_n06.b1 PHD_FILE: MSMg01no465_n06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:05 2005CHROMAT_FILE: MSMg01no465_n06.g1 PHD_FILE: MSMg01no465_n06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TGTAATATTAATAATTTTTAGTTCCTGAGGGGGTTTTTATATTTGTTATT
ATTATTATTTGGTTTTTCAAGACAGGGTTTATCTGTATAGCCCTGGCTGT
CCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCC
TGCCTCTGCCTCCGGAGTGCTGGGATTAAAGGCGTGTGCCACCACACCCG
TCTATTATTATTATTATTATTATCATTATTATTATTAAAAACTACAAGGC
ATATTGACAACTTATTGTGTAATTAAACCCTTACACACAAAGTATAACTT
TGTAGTTCCTATTAGGCATCCTAATTATAAGCATTTAAGCATAAATAAAA
ACCTATAAACTGATTTATATAGCTTTTCAACATAACAGGGCCTACGCCTA
ATATTTGTACATATTTATAGAACATATTGCAGTCTTTATAAAAACCATAT
TTGGTCAATACCTCTTTCTTACCAGTTCTGTCCACATCTTTGCCAGTGTT
TCTTTCCTTGCATTAACTTCTCTTAGTCTGTCACTTTATCGATCCCCCCC
CCATTTTCTTTTTTTCCTTCCCCCCGCCCCCTTTCTTTTTTTTGTCCACT
TCCTATTATTTGGTTATCTTTCCCTCTCCCCCCGTTCTCCCCCCATCACC
ACCTCTTTCTCTCTATACCCTCCCTGTTCTCTCCATCTTCCTTTCTCCCT
CTTTCCTCCCCCGCCCTTTTCCCTTTTTCTT
ATATCTCTTATNCAGACACCTGCGCCGCCACCGCGCAGTGTTATGAAANT
ACTCCTCCTTATTATTATTATTACGCGACGGCTCGTGAACAGCGACCAAA
CAATATCACATGCACCGCCACTTTGCATGTAAAGAACAACGCCCGCGCCG
CCTCGCGGTGGCAGTGTTGTGTCTATGAATGAGTGCGTCATATACACATC
GTGCTCGGTCGTCGTGGCTAGTGCCAACTTTCGTTATAGATTAACCACAA
CGAGACGGGTCGCTTAATCAACGACTGTCGCCGCCAGTCCATTTTTCCTC
CGCCCCACACTCTAGTTTCTGCACGTTATAGTGACCGAGGCGTAGAGTGA
ACTAAAACGGAGATACGACACAACTACCAAAAGATACACGATGCTTCGTT
CATTCGTTTCGCGGCGGTCACGAGATAGTCGTTACTCCAATGACTATAAT
CGAATCTCATATGCCCGATTTAATGCGATGCTGGGCCTCTCCCCACCGAT
ATCCGCGGCGCTCCCCCCGCAACACCTGCCTGCTGTATCTATATTATACA
TGTATAGACGTCGGCTTCGCCGGGATTTCGACCGACGACGCGTGTTCCGC
GCTCGCCCTATAAGTGCCGCGGCACACCTATTATCGGTATGTACTCGTAT
AATTACGAAGCCCGCGCGCCGCCGCGCTTATCACCATACTCATAGATACA
ACTACTGACCCCTGCCTTCATTGTCGCGCTATAACACGCGCATCGACCAC
GGCGTCTGTANACTTTATTATTTGCCATCGTTGGCTCGCTAGACATCGAT
GTATAAAAGTGACGACCCGCACATATCGTATTTATTACGCTTACATGTCC
GGCGTAGCGTTGTTTATATATCGTTGACCTCGCCCTCATATTTGCGCGGC
TTTCGTATATATTCACATATAGGGCCACCGCCGTTCCTGTCCGCGTTATG
CCTCGGTAGCCAAGCGAAATAGCTGGATCTGGCGATGTATATATAGCGCA
ATACAGATATCCCGCTGTCTGTATTACGCAAATGCCCCATACACAGATGA
GCTGTGCGTGTATACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_n06.b1 MSMg01no465_n06.b1 CHROMAT_FILE:
MSMg01no465_n06.b1 PHD_FILE: MSMg01no465_n06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:05 2005
         (350 letters)



>mm_chr16_52696362_52697111
          Length = 750

 Score =  530 bits (274), Expect = e-155
 Identities = 297/306 (97%), Gaps = 3/306 (0%)
 Strand = Plus / Minus

                                                                       
Query: 45  ttttatatttgttattattattatttggtttttcaagacagggtttatctgtatagccct 104
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 ttttatatttgttattattattatttggtttttcaagacagggtttatctgtatagccct 691

                                                                       
Query: 105 ggctgtcctggaactcactctgtagaccaggctggcctcgaactcagaaatctgcctgcc 164
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 ggatgtcctggaactcactctgtagaccaggctggcctcgaactcagaaatctgcctgcc 631

                                                                       
Query: 165 tctgcctccggagtgctgggattaaaggcgtgtgccaccacacccgtctattattattat 224
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tctgcctcccgagtgctgggattaaaggcgtgtgccaccacacccgtctattattattat 571

                                                                       
Query: 225 tattattatcattattattattaaaaactacaaggcatattgacaacttattgtgtaatt 284
           ||||||   ||||||||||||||||||||| |||| |||||||||||||| |||||||||
Sbjct: 570 tattat---cattattattattaaaaactagaaggtatattgacaacttaatgtgtaatt 514

                                                                       
Query: 285 aaacccttacacacaaagtataactttgtagttcctattaggcatcctaattataagcat 344
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 513 aaacccttacacacaaagtataactttgtagtttctattaggcatcctaattataagcat 454

                 
Query: 345 ttaagc 350
           ||||||
Sbjct: 453 ttaagc 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space:   252681
Effective search space used:   252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)