BAC Information

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BAC

Clone NameMSMg01-466C04
Chromosome16 (Build37)
Map Location 15,220,843 - 15,221,333
singlet/doubletsinglet
Overlap geneLOC385748
Upstream geneMyh11, 0610037P05Rik, Abcc1, Gm1758, Snai2, Efcab1, LOC100042737, LOC665653
Downstream geneLOC100042743, LOC547302, EG632352, Ube2v2, LOC665682, Mcm4, Prkdc, 2410018G20Rik, Cebpd, 2310008H04Rik, LOC100043266, LOC224010, D16Ertd727e, Pkp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466C04.T7 (MSMg01no466_c04.b1)MSMg01-466C04.TJ (MSMg01no466_c04.g1)
ACCAG550152AG550153
length754753
length of high quality
(start - end)
572 (74 - 645)492 (74 - 565)
definitionCHROMAT_FILE: MSMg01no466_c04.b1 PHD_FILE: MSMg01no466_c04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:30 2005CHROMAT_FILE: MSMg01no466_c04.g1 PHD_FILE: MSMg01no466_c04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:30 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGCGCG
GAATTCTTTCCTTACCATGACAACCACATTATTAAAACATTATCAATTAT
TTGGGTCAATTTCATTTTTAAACTGTCTTAACTGATCACCTATGCAGAAT
TATTGGACCTGAGTTATGAACTATTTGAATCATCATGATTATATTTTCTT
ATGCAATGTGAATGGCTGCTCTGACTTGGTGACTTGGTGGGAATAAGTGA
GACACTTGAAATCTTCCCTTCTATGTGATGCTAAGTAGTAAGTAGGTCAC
ATCTCACAAGGAATATTTTTTGCAGGCCCTACTAGGAGGAAAGAATAGTA
ACAGCATGCACTGATTGTTGTATCACTGATACCCTATGTAGCTTAAGAAT
GTAGTATTAAGCAAAAAGTGAAAATCATTATCATTTTGCCGAAGAAACAA
AATACAGAATGAAGGCAAATGAGCTTGTTATGGGTCCCAGAGATCCCACT
CTGATTCTGAAGCAAATTTTAATACAAAGGCATCTACATACAACTTCTAT
GACTATTTATATTAGAAAGATTCAGAGCAGATGAGGCCAATGTGGCCTAT
CTTGTCAAAGATAAATATCTGCTTAATGAAATTCTCCACTGCTAAAATGC
CTCAACTTCCTGCTGCTGGAGGTCCCTAAGAAGTGGTGGTCACTTAACCT
GACTTATTCACTGTTTGCATTTAGAGGCGATTGGCACATGAAAGTCCTTT
CAAN
GCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAAGCCCAAGGTCTTGCTCAAGGACATT
CTAGGGCTGTTGGAACACTGGCAGAAGGCTTTAGAGAGCACGTGGATCCA
TACACTAGACTAACGCGGGAATGGAGAATTAATGTATGGGTTAGAGAGAA
CGTCAGACTCCAGGAGGAGAGCTTCCTTGAAACTCTTTTTGCCTCATGAG
CAGCTTTTAGGCATCCCTACCTGACAAGCTGACTCGACCAGAGTGCCATG
GTAAGGCAGGATTATTTCTTGGCTTTCAAGGAATGCCAAGTGCTCTGCTG
CAGTCTGGGCCTTGTTCAGCTCTTCTATATCTAGCTCCAACTGGTAATAC
TGTGGCCTCTCCTGACCTTCCTACTACTGCTCAGTCCCTACAGCTGTGCC
AAAACTTGCACCTCTTGCTACAGTTGCTGCCACTGCTCCCAGGGCTGTGG
CTCCATACAAGTATGCCTCCAGTGTCTGAAGCCCTCACCCTACCATTCAT
CTGCTGCAGGACACCTAGTCTGCAGCCCATGCCCAGGGTCAGAAGCACAT
GATTGCCTCCTTGTTGGCTGTAGCGGCCCTTCCCCCCCCCATCTCCCAGG
AGCAGAAGCAGATGTTGGGGGAGCATCTGTTTTCCACTTATCCCAAAATA
TGATTTCCCACTTGGGCTGGTACCACCTCCTGATATGCTCGCTTGTATCT
CCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_c04.g1 MSMg01no466_c04.g1 CHROMAT_FILE:
MSMg01no466_c04.g1 PHD_FILE: MSMg01no466_c04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:30 2005
         (492 letters)



>mm_chr16_15220642_15221533
          Length = 892

 Score =  874 bits (452), Expect = 0.0
 Identities = 482/492 (97%), Gaps = 1/492 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagcccaaggtcttgctcaaggacattctagggctgttggaacactggcagaaggcttta 60
           ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 202 aagcccagggtcttgctcaaggacgttctagggctgttggaacactggcagaaggcttta 261

                                                                       
Query: 61  gagagcacgtggatccatacactagactaacgcgggaatggagaattaatgtatgggtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gagagcacgtggatccatacactagactaacgcgggaatggagaattaatgtatgggtta 321

                                                                       
Query: 121 gagagaacgtcagactccaggaggagagcttccttgaaactctttttgcctcatgagcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gagagaacgtcagactccaggaggagagcttccttgaaactctttttgcctcatgagcag 381

                                                                       
Query: 181 cttttaggcatccctacctgacaagctgactcgaccagagtgccatggtaaggcaggatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 382 cttttaggcatccctacctgacaagctgactcgaccagagtgccatggtaaggcaggag- 440

                                                                       
Query: 241 atttcttggctttcaaggaatgccaagtgctctgctgcagtctgggccttgttcagctct 300
           |  ||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 acctcaaggctttcaaggaatgccaagtgctctgctgcagtctgggccttcttcagctct 500

                                                                       
Query: 301 tctatatctagctccaactggtaatactgtggcctctcctgaccttcctactactgctca 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 tctatatctagctccaactggtaatactgtggcctctcctgacctttctactactgctca 560

                                                                       
Query: 361 gtccctacagctgtgccaaaacttgcacctcttgctacagttgctgccactgctcccagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtccctacagctgtgccaaaacttgcacctcttgctacagttgctgccactgctcccagg 620

                                                                       
Query: 421 gctgtggctccatacaagtatgcctccagtgtctgaagccctcaccctaccattcatctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctgtggctccatacaagtatgcctccagtgtctgaagccctcaccctaccattcatctg 680

                       
Query: 481 ctgcaggacacc 492
           ||||||||||||
Sbjct: 681 ctgcaggacacc 692


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)