BAC Information

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BAC

Clone NameMSMg01-466M22
Chromosome16 (Build37)
Map Location 50,816,238 - 50,816,631
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043767, Cd47, EG433024, LOC100043769, LOC628951, EG224180, EG667802, LOC100043404, Bbx, LOC100043414, Ccdc54, LOC672778, 5330426P16Rik
Downstream geneEG639820, LOC627543
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466M22.T7 (MSMg01no466_m22.b1)MSMg01-466M22.TJ (MSMg01no466_m22.g1)
ACCAG550667AG550668
length860780
length of high quality
(start - end)
---388 (85 - 472)
definitionCHROMAT_FILE: MSMg01no466_m22.b1 PHD_FILE: MSMg01no466_m22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:26 2005CHROMAT_FILE: MSMg01no466_m22.g1 PHD_FILE: MSMg01no466_m22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTCTCTCTCCAAATTTGCGCCGCTATACGACTCCTAATACAACACCACC
GCGGAATTCAGTGTTCTCAGACACCACATGTTGAATAAGGTGTCTTTAAA
GAAAAACACAGCCTAAGTCAAGGCCAGGCATGAGTGGTTGATAAAGATGG
TATGAGTAGGGTTATGATGTCCTTGCGGGCCCCCCCCCCCCCCTCCCCTC
TCTCCCCCTCTCCTCCATCTCTCTACTTCTCTCTTTCTTCCCCGCCCTTC
CTCTTTTTCTCTCTCCTCCTCTTTTCCCCCTCCCTTTTTCCCCCTCTCTT
TTCCCTCCCCCCCCCCCCCCCTCTCCCCCCCTTCCCTCCCTTCCCCCCCC
CCCCCACCCCCCCCCCTCCCCCCCTCGTCCTTTCTTTCCTCCCCCCCTTC
CCCCCCCCCTTTTTTCCCTCCCTTCCCCTCTCCTCCCCCCTCCCTTTCTC
TCTCTTCTCCCCCTCTCCCCCTTCACTTCGCCCTCTCCCCTCTCCCCCTC
CCTCTCCTCCCTCCTTCCCCCTCCTCCCCCCCCCCGNCTCTTCTCTCCCT
TTCCCCCTCCCCCCCCCCCTTTTCTTCCTCCCCCCCTTCCCTCCCCCCCC
CCCCCCCCTCTTCCTATCTCCCCCCCCTCTCTCCCCCTTCCCCCCTCCCC
TCCTCCTACCCTCTCTCTCCCCTCTCCCCCTCCCTCTCCCTTTTTTTTTT
TCCTACCCCTCTCCCCTTCCCCCTCCCCCCTTTCTTTCCTCTCCCCCCAC
CTCCTCCTCTCTCTCACCCCTCCTCCCCTTTCTTTCCCCCCCCTCCCCCC
CTTCCCCCCCCTTTGTCCCCCTTTTCCTCTCCCCCCCCCCCCCCCCTCCC
CTCTTCTTCN
GGAAACAATCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAATCCAAGGAAGAGT
ACCACTCATGGTCAGAGGGTATTCCTACCTCAATTAATTTAATTAAGATA
ATCCCTAACAGGAATGGCAAAGGCTTGTCTTCCAGGTAACTCTGGATTCT
GTCAAACTGACAATTAACATTAGCCATCTCAACTACTAAGTTAAAGATGC
CATCTGACATATAAATCTAAGACAACAAAATAAAAAAAAAATTAGTGGTT
CCCGGGGTTTAAGGTAGGGCCAACAAAGCTCACAGATTTTTGGGGGGCAG
TTAAAATACTTCATATAATGTAGTAAGAACATTAGACATTTGCTCAAATT
CTTAAAATGCACAACACCAATCGCTAATCTAAGTCCACCTAAAAACTTTG
AGTGATGGTAATGTGTTAAATGTAATAAGTTTATCCCTTTTCACCTAATT
AACCCTTAAGGGTCCCTAACTCATTTAACTTTGGATTCCTCTAAGAAGAA
TAAAATCTTTTCTATGCGTTTTCCTATTAAAGTGCTTCGTACATATAAAA
ACTAATTCCTAATACTATTATTTTATTTATCTTTGGGCCCCTTTCTCTTT
AAATCTTTATTTATGCGACTGCGTCCTATATTTTTTTTTGTTTTTTACAG
TTTCATCTTTTTATCTTTTCTTTTCTCTCGTCCATAATCCATACTTCTCT
ACAGTACAATTCCCTACTATATAAAATCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_m22.g1 MSMg01no466_m22.g1 CHROMAT_FILE:
MSMg01no466_m22.g1 PHD_FILE: MSMg01no466_m22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:27 2005
         (388 letters)



>mm_chr16_50815891_50816684
          Length = 794

 Score =  654 bits (338), Expect = 0.0
 Identities = 378/394 (95%), Gaps = 6/394 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   taatccaaggaagagtaccactcatggtcagagggtattcctacctcaattaatttaatt 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 741 taatccaaggaagagtaccactcatggtcggagggtattcctacctcaattaatttaatt 682

                                                                       
Query: 61  aagataatccctaacaggaatggcaaaggcttgtcttccaggtaactctggattctgtca 120
           |||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 681 aagacaatcccaaacaggaatggcaaaggcttgtctttcaggtaactctggattctgtca 622

                                                                       
Query: 121 aactgacaattaacattagccatctcaactactaagttaaagatgccatctgacatataa 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 621 aactgacaattaacattagccatctcaactactaagtaaaagatgccatctgacatataa 562

                                                                       
Query: 181 atctaagacaacaa----aata--aaaaaaaaattagtggttcccggggtttaaggtagg 234
           ||||||||||||||    || |  |||||||||||||||||||| |||||||||||||||
Sbjct: 561 atctaagacaacaacaacaacaacaaaaaaaaattagtggttcctggggtttaaggtagg 502

                                                                       
Query: 235 gccaacaaagctcacagatttttggggggcagttaaaatacttcatataatgtagtaaga 294
           ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 501 gccaacaaagctcacagattttttgggggcaattaaaatacttcatataatgtagtaaga 442

                                                                       
Query: 295 acattagacatttgctcaaattcttaaaatgcacaacaccaatcgctaatctaagtccac 354
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acattagacatttgcccaaattcttaaaatgcacaacaccaatcgctaatctaagtccac 382

                                             
Query: 355 ctaaaaactttgagtgatggtaatgtgttaaatg 388
           ||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaaaaactttgagtgatggtaatgtgttaaatg 348


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 794
Length adjustment: 9
Effective length of query: 379
Effective length of database: 785
Effective search space:   297515
Effective search space used:   297515
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)