BAC Information

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BAC

Clone NameMSMg01-469E11
Chromosome16 (Build37)
Map Location 28,446,013 - 28,578,910
singlet/doubletdoublet
Overlap geneFgf12
Upstream geneCcdc50
Downstream gene1600021P15Rik, EG666717, Hrasls, Atp13a5, Atp13a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469E11.T7 (MSMg01no469_e11.b1)MSMg01-469E11.TJ (MSMg01no469_e11.g1)
ACCAG552552AG552553
length835763
length of high quality
(start - end)
199 (70 - 268)501 (74 - 574)
definitionCHROMAT_FILE: MSMg01no469_e11.b1 PHD_FILE: MSMg01no469_e11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:49 2005CHROMAT_FILE: MSMg01no469_e11.g1 PHD_FILE: MSMg01no469_e11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,446,013 - 28,446,205)(28,578,457 - 28,578,910)
sequence
GTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAAGATGCCAGAAGTGGGAGCGGTTAACCAGACTCGGGGTAGGG
GCGCGGGGCGGGGCGTGAGGGGGGGTGCAGCTGTTTCCAGCTGCGGTGAG
CGCGCCTCTCCTCCAGCAGCACTGCAAAGAGAGCGGGAGACGAGGGAGGG
GGAGGGAGAGAGGGAGATCCTCGAGGGCCAAGCACCCCGGGGATCCGCGT
TTTCCCGAGAGCGGGAGCTCCTCGCTCTCACTGCCTGCGTTCCGGCATGA
GACGGCCACAGTTGTTTTTTTCTTTCGACCCCCTCCGTCTGGTATGACCT
AGTAGTTTTTTGTATGCTCCTCCATTGGTTCCGCCTGTATATTGTGATTT
CCTTAGCTCCGTTGCCCCCTCGCCTTTTTTCCGCAGCTTATCCGCCATCG
CGTTTCTCTTTTTCCCCGCCCCTCCGCCCGTTTTTCCCTTCCCCGCTACC
GAACCCGCCCCCGTTTCTTTGTATTTTTCTTTCCCCTCCATACCGTCAAC
TACGCTTTCCTCTCGTTTCCCCCTCCGTTATTTTCTATTCCCTCTTCACC
CATCCTACATTACCCCCATTTGCTCCCCTTTTACGACTCCTCTAACACCT
CTGTTCCCCCGTTATATTCTTCCCGCTCTATTCTTGCGCTCCTCTCTCTC
CCTCGTCTATTTCTCTTTTTACCCTATATTCTCCCCTTTTCCCTGTCTTC
CCTCCTTCCTATTCTTACCTTCCCCCCTTATCTCCGCGTTTCGCTCCCCC
GCTCTTTTTCGCGCCCCTTATTTTTCGCCCTTTCN
CGAATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCATCAGGCTGAGAAGCAGGATACCGC
CCTCTTTGTCCTGGCTCAGTTTACTGGCGAGGTAGCTTTCCTGCATGAAG
TTTCAAACCCTCCTCATATAATCTCCTTCTCTGTCTGCCTTTCCCTCAGG
CTCTCTTCAGAAACAAGAACATTGAAGCTTTTTTTTTTTAATTTTTAATA
TTTTTTTTATTACGCATTTCCCTCAATTACATTTCCAATGCTATCCCAAA
AGTCCCCCATACAAAGTATTTGCGGTCATCATTCTGAAATAGATGTTTCA
CTGTTATCTAGACAACCCGATCCCTCGGCTGAAAGGGACTGGTGGTCTTT
TAGTGTCCTCTGATTCTGTGCCTGTGGCACACATTAGCATGTGGTCACCT
GAAGCGTGAGTGTATAAGTCTGGGTCTATACCTAGCTCCAAAAAAAAACC
CCTACACTATAAAGTTTCACACTTTTTTGTAGTATTTTTGTAGAACCTTT
CACTTTTTACATTTATTATCAATATCGCGCGTGTGTGTGTGCGTGTGTGT
TTTTCCCCCTCTTCCTTTCTCCTTTTCTCTTTTTTCCCCTCTCTCTTTTT
CTTTTTTTTTTTTCCCTTTTCTCTTCCTCCTTTTTTCCTCCTTTTTCCCT
CCCTTCTTCTTTTTTCTTCTTCCCCTTTTTCTCCTCTCCCCTTTTTTCTT
TTTTTTTTATCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_e11.b1 MSMg01no469_e11.b1 CHROMAT_FILE:
MSMg01no469_e11.b1 PHD_FILE: MSMg01no469_e11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:49 2005
         (199 letters)



>mm_chr16_28445813_28446411
          Length = 599

 Score =  342 bits (177), Expect = 7e-99
 Identities = 189/193 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgggagcggttaaccagactcggggtaggggcgcggggcggggcgtgagggggggtgca 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 gtgggagcggttaaccagactcggggtaggggcgcggggcggggcgggagggggggtgca 260

                                                                       
Query: 61  gctgtttccagctgcggtgagcgcgcctctcctccagcagcactgcaaagagagcgggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgtttccagctgcggtgagcgcgcctctcctccagcagcactgcaaagagagcgggag 320

                                                                       
Query: 121 acgagggagggggagggagagagggagatcctcgagggccaagcaccccggggatccgcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acgagggagggggagggagagagggagatcctcgagggccaagcaccccggggatccgcg 380

                        
Query: 181 ttttcccgagagc 193
              ||||||||||
Sbjct: 381 gggtcccgagagc 393


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 599
Length adjustment: 8
Effective length of query: 191
Effective length of database: 591
Effective search space:   112881
Effective search space used:   112881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no469_e11.g1 MSMg01no469_e11.g1 CHROMAT_FILE:
MSMg01no469_e11.g1 PHD_FILE: MSMg01no469_e11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:49 2005
         (501 letters)



>mm_chr16_28578010_28578910
          Length = 901

 Score =  824 bits (426), Expect = 0.0
 Identities = 447/454 (98%)
 Strand = Plus / Minus

                                                                       
Query: 48  ttactggcgaggtagctttcctgcatgaagtttcaaaccctcctcatataatctccttct 107
           |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 901 ttaccggcgaggtagctttcgtgcatgaagtttcaaaccctcctcatataatctccttct 842

                                                                       
Query: 108 ctgtctgcctttccctcaggctctcttcagaaacaagaacattgaagcttttttttttta 167
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 ctgtctgcctttccctcaggctctcttcagaaacaagaacattgaagcttttttttttta 782

                                                                       
Query: 168 atttttaatattttttttattacgcatttccctcaattacatttccaatgctatcccaaa 227
           |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 781 atttttaatattttttttattacgtatttccctcagttacatttccaatgctatcccaaa 722

                                                                       
Query: 228 agtcccccatacaaagtatttgcggtcatcattctgaaatagatgtttcactgttatcta 287
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 agtcccccatacaaagtagctgcggtcatcattctgaaatagatgtttcactgttatcta 662

                                                                       
Query: 288 gacaacccgatccctcggctgaaagggactggtggtcttttagtgtcctctgattctgtg 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gacaacccgatccctcggctgaaagggactggtggtcttttagtgtcctctgattctgtg 602

                                                                       
Query: 348 cctgtggcacacattagcatgtggtcacctgaagcgtgagtgtataagtctgggtctata 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 cctgtggcacacattagcatgtggtcacctgaagcgtgagtgtataagtctgggtctata 542

                                                                       
Query: 408 cctagctccaaaaaaaaacccctacactataaagtttcacacttttttgtagtatttttg 467
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cctagctccaaaaaaaaacccctacactataaagtttcacacttttttgtagtatttttg 482

                                             
Query: 468 tagaacctttcactttttacatttattatcaata 501
           |||||||||||||||||||| |||||||||||||
Sbjct: 481 tagaacctttcactttttacttttattatcaata 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)