Query= MSMg01no469_g22.b1 MSMg01no469_g22.b1 CHROMAT_FILE:
MSMg01no469_g22.b1 PHD_FILE: MSMg01no469_g22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:01 2005
(547 letters)
>mm_chr16_26519305_26520251
Length = 947
Score = 876 bits (453), Expect = 0.0
Identities = 526/562 (93%), Gaps = 22/562 (3%)
Strand = Plus / Minus
Query: 6 gaattcttcaagtgttgcaactgatgtcctgt--ttgtcatactctggatctcaagtgtg 63
|||||||||||||| | |||||||||||||| | |||||||||||||||||||||||
Sbjct: 666 gaattcttcaagtgcaggaactgatgtcctgtcct--tcatactctggatctcaagtgtg 609
Query: 64 aatgatcagaatgaaatgcacagaacctccacaagggggtgcaaagggctcagaaggaga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 aatgatcagaatgaaatgcacagaacctccacaagggggtgcaaagggctcagaaggaga 549
Query: 124 aaacaaaatgaggtcggatatgtgttaaccctgaaatctgtgttaaatggctcaacagtt 183
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 548 aaacaaaatgaggtcggatatgtgttaatcctgaaatctgtgttaaacggctcaacagtt 489
Query: 184 tcaaaaaacaaacaaaatgaggtactcaatatttgttgttgactttacattatatggacc 243
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 488 tcaaaaaacaaacaaaatgaggtactcaatatttgtggttgactttacattatatggacc 429
Query: 244 atcgtaaatggaaaaggatactaacagagatttctatttgatgatgaaatactccatatt 303
|| |||||||||||||||||||||| || |||||||||||| ||||||||||||||||||
Sbjct: 428 attgtaaatggaaaaggatactaactgacatttctatttgaagatgaaatactccatatt 369
Query: 304 cttagccaggagcttagaggtcaaggatctaaaacaagagttcctgatttgttcatagtt 363
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 368 cttagccaggagcttagaggttaaggatctaaaacaagagttcctgatttgttcatagtt 309
Query: 364 taagtagcatactatgtttttgagactgttgcattttagtacttcagaattttatcatac 423
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 taagtagaatactatgtttttgagactgttgcattttagtacttcagaattttatcatac 249
Query: 424 aatccccaagactacaaaagtcatatgtgtgtgtgtgtgtgtg------tagatagagat 477
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 248 aacccccaagactacaaaagtcatatgtgtgtgtgtgtgtgtgtgtagatagatagagat 189
Query: 478 ----atagatagagatacatagatagatagatatag--------atagatacntagataa 525
|||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 188 atagatagatagagatacatagatagatagatatagatagatacatagatacatagataa 129
Query: 526 tttcaaattataaaagtattac 547
||||||||||||||||||||||
Sbjct: 128 tttcaaattataaaagtattac 107
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no469_g22.g1 MSMg01no469_g22.g1 CHROMAT_FILE:
MSMg01no469_g22.g1 PHD_FILE: MSMg01no469_g22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:01 2005
(417 letters)
>mm_chr16_26433327_26434143
Length = 817
Score = 745 bits (385), Expect = 0.0
Identities = 409/417 (98%)
Strand = Plus / Plus
Query: 1 catgttaatgagagactcggttatcaaatgaaataggttctctgaattctaatctgctta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgttaatgagagactcggttatcaaatgaaataggttctctgaattctaatctgctta 260
Query: 61 aaatgcttaaaaggtttcacttaattctatttttctgcctaaaggttctgagaaaaaaca 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 aaatgcttaaaaggtttcacttaattctatttttctgcctaaagattctgagaaaaaaca 320
Query: 121 tcctttctggaacttaataagtgtgaagagtggacatgactgaaatatggttgtcatgca 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 tcctttctggaacttaataagtgtgaagagtgggcatgactgaaatatggttgtcatgca 380
Query: 181 ttggattgaactaatttacatcgccttaaataatgctattgtgctcagggtagactatgc 240
| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagattgaactaatttacatcaccttaaataatgctattgtgctcagggtagactatgc 440
Query: 241 tcctagagcacatactcttaatcatttctaattagtccagatccagctccctgcttaggc 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcctagagcacagactcttaatcatttctaattagtccagatccagctccctgcttaggc 500
Query: 301 agcacttctgccttgtgcataaattcctgagaagcagccagtgacttagaaaatgtattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 agcacttctgccttgtgcataaattcctgagaagcagccagtgacttagaaaacgtattt 560
Query: 361 gacagtgatgtatacttcaaattattcagaatgtgcccatacatcttaaactcggtg 417
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gacagtgatgtatactttaaattattcagaatgtgcccatacatcttaaactcggtg 617
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space: 329664
Effective search space used: 329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
