BAC Information

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BAC

Clone NameMSMg01-469P08
Chromosome16 (Build37)
Map Location 30,589,324 - 30,589,517
singlet/doubletsinglet
Overlap genenone
Upstream geneOpa1, Gm1968, LOC100043102, 9030404E10Rik, Hes1, EG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44, Lsg1
Downstream geneBC022623, LOC100043122, AI480653, Centb2, Ppp1r2, Apod, 1700007E05Rik, Bdh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469P08.T7 (MSMg01no469_p08.b1)MSMg01-469P08.TJ (MSMg01no469_p08.g1)
ACCAG553072AG553073
length752788
length of high quality
(start - end)
72 (244 - 315)196 (129 - 324)
definitionCHROMAT_FILE: MSMg01no469_p08.b1 PHD_FILE: MSMg01no469_p08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:42 2005CHROMAT_FILE: MSMg01no469_p08.g1 PHD_FILE: MSMg01no469_p08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCGGCTCTATAATTTGTGGGCGCTAAANGANTCATCTTTCAAAAAGGAT
GCGNNGGAATCAGAAATTCCCCAAAGTTAANAGGGGCTTTTAGCCAGGTG
TGGTGGCACACGCCTTTATTCCCAGCACTCGGGAGGCAGAGGCAGGCGGA
TTTCTGAGTACGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCC
AGGGCTACACAGAAAAACCCTGTCTCGAACAACCCTCAAAAAAAAAAAAA
AAAAGGAGGTTTTAACTCTCTTCTCTGTTCCCTGGGAGGGAGAGAGTAAG
TGGCCTCTTCCAAGCCAAGTATTGTTTTCTGTAGGAGAACCCCCAGAATA
ATGGTGAGCATGCGGGGAACGGTGACACCAGAACCCACTCCTTAGCCCGA
TGCTGGTCCAGCCACCTGAAGATGAATGGCATGTTGTGATAGAAGATTTT
AAGACACTTACCTGCCCTCTGAGGCGTTAGGGTTTAGGTTACCTGACGAT
TGCCGGTTATTCTGCTCTCTCTCCTCGCGTTTTGCCAGCTTGCCTGTTTT
CTGCTGACCCCCTTGTTTTTTTTCCTTTTTTCGTCCCACCCTCCTCGCTT
TCCTCTCTCGCTTTTCTTTTCCCACCTCTCGTTCCCCCCTTTCCTCTTTC
CCCTTCTCTTCCTTTTCTTGTTTCCCTCTCCCCTTTCTTTCCTTTTTTCT
TTTTCCCCCCTTTCTCCTCCTTTTCCTTCCCGCCTTCGCTTCTTTTTCCT
TG
CTCTTCCGATGCTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTACAAGAGAAATTCTCTGTTTCCCAGCATAGAAG
CACGACTGTAAAATCTCTGATCACACTTTCCAGGAGGAAGATAGAGAGAA
GATACACAAATAGAATTAGAGACAGCATCTGTTTTTTGGTTTTTTTTTTT
TATGCAAGAGCAAGAGAAATTTTATTTAATCCAGCATGCAGGGGTCACCC
TGCATATTTTTAGAGAACGACCGCATCTGGCACTGTTAAAGTTAACCCTA
ACTCAAGGAAACGATGAGGGTTACGCTCCCTAATAATGGCAACACTAATA
GAGAGTTTAGAGAAAATGGCCATCTCATTACTAGAGTAACCATTCAACCA
GTAACTCAAGGCTTCACCTTAGTTTCCTTTTCCAGAGCATTTGAAAAAGG
AAACCCTCTTGGTTGGTTGGTTAGCTAGTTAGTTTGCTTAACACAGATTC
ATATCCCTCGTCCCATACGGCTTCTCCGTGTATCCCTATCCTGCCCTTGA
ATTTACTTCCGTACCCCCCTTTTTGCCTTTCTCTCCAGCAATTTGGCCCG
CCTCCGTCTCCCCAATAGTTTGGTGTTCCCCCCCTTGTCTTCCCCTATTT
TTTCCCCCCCCCCTTCCGTCCCTTTCTTTCCTTTTTTCTCCCTGTTACCC
CCCTCCTTTATTTCTATCTATTCGCTCCCTTCTTTCTTGTCCCTTTTTCC
TCTTTATTTTCCTCCTTTTTTCTCCACCCCCCTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_p08.g1 MSMg01no469_p08.g1 CHROMAT_FILE:
MSMg01no469_p08.g1 PHD_FILE: MSMg01no469_p08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:42 2005
         (196 letters)



>mm_chr16_30589124_30589718
          Length = 595

 Score =  308 bits (159), Expect = 2e-88
 Identities = 187/199 (93%), Gaps = 9/199 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccaggaggaagatagagagaagatacacaaatagaattagagacagcatctgttttttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 tccaggaggaagatagagagaagatacacaaatagaattagagacagcatctg-tttttg 259

                                                                       
Query: 61  gttttttttttttatgcaagagcaagagaaattttatttaatccagcatgcaggggtcac 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tttttttttttttatgcaagagcaagagaaattttatttaatccagcatgcaggggtcac 319

                                                                       
Query: 121 cctgcatatttttag--aga-a-cgaccgcatctggcactgttaaagttaaccctaactc 176
           |||||||||    ||  ||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 320 cctgcatat----agggagagagcgaccgcatctggcactgttaaagttaaccctaactc 375

                              
Query: 177 aaggaaacgatgagggtta 195
           ||||||| || ||||||||
Sbjct: 376 aaggaaatgaagagggtta 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 595
Length adjustment: 8
Effective length of query: 188
Effective length of database: 587
Effective search space:   110356
Effective search space used:   110356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)