BAC Information

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BAC

Clone NameMSMg01-470A02
Chromosome16 (Build37)
Map Location 89,707,874 - 89,874,061
singlet/doubletdoublet
Overlap geneTiam1
Upstream gene2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik
Downstream geneLOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk, 2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470A02.T7 (MSMg01no470_a02.b1)MSMg01-470A02.TJ (MSMg01no470_a02.g1)
ACCAG553108AG553109
length753809
length of high quality
(start - end)		247 (77 - 323)230 (80 - 309)
definitionCHROMAT_FILE: MSMg01no470_a02.b1 PHD_FILE: MSMg01no470_a02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:46 2005CHROMAT_FILE: MSMg01no470_a02.g1 PHD_FILE: MSMg01no470_a02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,873,817 - 89,874,061)(89,707,874 - 89,708,104)
sequence
CTTACCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGAAC
ACCGCGGAATTCTCAGTCATTGCATGAACGCTTAGTCTTTTGTAAGAATC
AGAAGGAAGATTCGCGTGCTCTTCCTAACCGTCCTGCTATTGAAGTCAAA
CATGGCTTCACTGAGAACAAGGGGCACTTTTGAGCTTCATCAAGCTCTGG
GGATCCTTCTTCCAGGTGTCAGGCTTTAGGAAGGTCACAGAGGTCACAGA
CAAATGCCCAGGACAAGAAGACAGGGTTAGGGAATAGCCTGAAAGTCGTC
TACAGAAAGATGTAAAGTCTGTAGAAAATATTTTGGTGGGGACTTGTGCA
GACTGATGTCGCTCCCCTTCCTCTGGGCATCCTATCTGCAAGGGCCTCCT
GCAGGGCAGCCTGCCTGCTGGCCATCACTCAGACCCATGGTTCGGCAGTA
TCCAGCTTTTCCTCTGTCCCTCTGCTCTGTTGTAAGCGCTCAGCGCTAGA
GTTCTGTTACCCTACTGCCCCTTGCCATTTTCCTGTTTGAGAATGAATCC
GAACCTCTGCACCCCACATCCCGTCCCACTTACCCGAACCCCTCTCTCTC
TGCAATTTCGTACACTTGTCGCTCTCCCGCCGTCCTTTGCGCTCACGCTC
TGCCTGCACCCCCCCCTGATACTCAACTTTTTAACGGCACTTACCTCCCC
CTTTTCTCCCAATCTGGATCTTTCCCTCTCCTCCTTTTTTCCCCCCCACC
CCC

TTTTTCTATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAAGCGAGGTAACTCAGAGA
CCGCTGGGGTCAGCACTTCCTCTATAGAGAGATTTCAAATAAAGGATTCT
GTACTTCTGGCAGTCATATTCAGTTCCTCTATTGCTGGAATGAGCCAACC
ATTCTGTGAAATATGATAATGACTCCAGTTTACAAAAGAGAGGACAAACT
AAGAAATGAATAGAGGGCTGGAGAGACAGCTCAGCTGCTAAACATTCTAC
TTTACTAGAACAAGAACCTAGGCTCATTTTTTTTTTAGGTGTGGTGGCGT
GTTTTTGAAATTCTGTTTTTCACGCTTAAGCACAGATGGGTATATTCTGT
ATGTTATATTCTCCAGTACAGCCTGTCTGGTGAGCTTATATACATTATAT
ACCCTATAAAAGTTTGCTTTATCCCTGATTAGCTGTACTCCGCCTTTTCA
CTTGGCCTTCACACGATTGTGTTGTCCCTCTCTTTTGCCGTATTTTCCCC
CTTTCCATTTCTTACACCTCATTTCCCTTTTTTCTCCCCACCCTCCCCTT
TCTTCCCCCTTATTTTCCCCCTTTTTATCCCATCCCCCCTCCCACCCCTT
TGTTCCCATCCTTTATTTCTACGCTCTTCTTATCTTCCATTTCGTTTGTA
TCTATTAATTTCTTACCTTCATCTATGTTTCTTCCCTATCATACCACTAC
CTATATACCTCTCTCTATGTCCCTTAATCCATTATTTACCTTCTTCCTTT
TCTTNCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_a02.b1 MSMg01no470_a02.b1 CHROMAT_FILE:
MSMg01no470_a02.b1 PHD_FILE: MSMg01no470_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:46 2005
         (247 letters)



>mm_chr16_89873617_89874261
          Length = 645

 Score =  439 bits (227), Expect = e-128
 Identities = 242/247 (97%), Gaps = 2/247 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacgcttagtcttttgtaagaatcagaaggaagattcgcgtgctcttcctaaccgtcctg 60
           ||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct: 445 aacgcttagtcttttgtaagaatcacaaggaaga-tc-cgtgctcttcctaaccgtcctg 388

                                                                       
Query: 61  ctattgaagtcaaacatggcttcactgagaacaaggggcacttttgagcttcatcaagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctattgaagtcaaacatggcttcactgagaacaaggggcacttttgagcttcatcaagct 328

                                                                       
Query: 121 ctggggatccttcttccaggtgtcaggctttaggaaggtcacagaggtcacagacaaatg 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 327 ctggggatccttcttccaggtgtcgggctttaggaaggtcacagaggtcacagacaaatg 268

                                                                       
Query: 181 cccaggacaagaagacagggttagggaatagcctgaaagtcgtctacagaaagatgtaaa 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 267 cccaggacaagaagacagggttagggaatagcctgaaagtcatctacagaaagatgtaaa 208

                  
Query: 241 gtctgta 247
           |||||||
Sbjct: 207 gtctgta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 645
Length adjustment: 9
Effective length of query: 238
Effective length of database: 636
Effective search space:   151368
Effective search space used:   151368
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no470_a02.g1 MSMg01no470_a02.g1 CHROMAT_FILE:
MSMg01no470_a02.g1 PHD_FILE: MSMg01no470_a02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:46 2005
         (230 letters)



>mm_chr16_89707674_89708304
          Length = 631

 Score =  400 bits (207), Expect = e-116
 Identities = 225/231 (97%), Gaps = 1/231 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaagcgaggtaactcagagaccgctggggtcagcacttcctctatagagagatttcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 ctaagcgaggtaactcagagaccgctggggtcagcacttcctctacagagagatttcaaa 260

                                                                       
Query: 61  -taaaggattctgtacttctggcagtcatattcagttcctctattgctggaatgagccaa 119
            ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 261 ataaaggattctgtacttctggcagtcatattcagttcctctattgctggaaggagccag 320

                                                                       
Query: 120 ccattctgtgaaatatgataatgactccagtttacaaaagagaggacaaactaagaaatg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccattctgtgaaatatgataatgactccagtttacaaaagagaggacaaactaagaaatg 380

                                                              
Query: 180 aatagagggctggagagacagctcagctgctaaacattctactttactaga 230
           || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 aagagagggctggagagacagctcagctgctaaacgttctactttactaga 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 631
Length adjustment: 9
Effective length of query: 221
Effective length of database: 622
Effective search space:   137462
Effective search space used:   137462
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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