Query= MSMg01no470_i14.b1 MSMg01no470_i14.b1 CHROMAT_FILE:
MSMg01no470_i14.b1 PHD_FILE: MSMg01no470_i14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:29 2005
(244 letters)
>mm_chr16_77082023_77082666
Length = 644
Score = 416 bits (215), Expect = e-121
Identities = 236/243 (97%)
Strand = Plus / Plus
Query: 1 ttgagaagtgttcatgaaaagctggaatggggaggtgatacaacctaacctggacttcag 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 201 ttgagaagtgttcatgaaaagctggaatggggaggtgatacaacctaagctggactccag 260
Query: 61 taacaggacccacaccaggcagtcacactgtactcagagctaataaccaacataaatccg 120
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaacgggacccacaccaggcagtcacactgtactcagagctaataaccaacataaatccg 320
Query: 121 actgtgctccccacagtgagagctccttagctcctgcagccagccggacactggctgatg 180
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 actgtgctccccatagtgagagctccttagctcctgcagccagccggacactggctgacg 380
Query: 181 gttgaccccttagtctagcacagagggcctttgtttctggcctctaacatttgctccagc 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 gttgaccccttagtctagcacagagggcctttgtttctggcctctaagatttgctccagc 440
Query: 241 ctc 243
|||
Sbjct: 441 ctc 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no470_i14.g1 MSMg01no470_i14.g1 CHROMAT_FILE:
MSMg01no470_i14.g1 PHD_FILE: MSMg01no470_i14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:29 2005
(394 letters)
>mm_chr16_77297223_77298012
Length = 790
Score = 708 bits (366), Expect = 0.0
Identities = 386/394 (97%), Gaps = 4/394 (1%)
Strand = Plus / Minus
Query: 1 tcgtgagttttgagtttataggcaatcaaagagctaccacagattttgaccatgtgaaga 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 590 tcgtgagttttgagtttatagacaatcaaagagctaccacagattttgaccatgtgaaga 531
Query: 61 aactctgatgaaatcaccgtgcctaaggaaacaaaaaatgggagaaggatcactggataa 120
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 aa--ctgatgaaatcaccgtgcctaaggaaacaaaaaatgggagaaggatcactggataa 473
Query: 121 acggcaagccacagtgtttgaaaagagaaagcagagtttgtacactttgcaacttagcac 180
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 472 acggcaagccacagtgtttgaaaagag--agcagagtttgtacactttgcaacttagcac 415
Query: 181 ccaaatccagctcgtgaaagaaacactacacggtgccttgcaattgggcatcagtttgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ccaaatccagctcgtgaaagaaacactacacggtgccttgcaattgggcatcagtttgaa 355
Query: 241 gcttcacctgtaactcaataaagctgcgtttaaatggaagaataactgccgtagcatcca 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 354 gcttcacctggaactcaataaagctgcgtttaaatggaagaataactgccgtaacatcca 295
Query: 301 atctatagacttcagggtgtaatttcttctcaaataatcaactttaatgtgaaaattcta 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 294 atctatagacttcagggtgtaatttcttctcaaataatcaactctaatgtgaaaattcta 235
Query: 361 aaatagaagatttcaagaaagaattttcaggaga 394
||||||||||||||||||||||||||||||||||
Sbjct: 234 aaatagaagatttcaagaaagaattttcaggaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 790
Length adjustment: 9
Effective length of query: 385
Effective length of database: 781
Effective search space: 300685
Effective search space used: 300685
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
