BAC Information

Click to search

BAC

Clone NameMSMg01-470L03
Chromosome16 (Build37)
Map Location 56,695,667 - 56,696,231
singlet/doubletsinglet
Overlap geneTfg
Upstream geneNfkbiz, Gm1752, Lrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1, Senp7, Impg2, LOC672835, Abi3bp
Downstream geneGpr128, Tmem45a, LOC668026, LOC668036, 2310005G13Rik, Tomm70a, Nit2, Tbc1d23, Tmem30c, 2610528E23Rik, 4631422O05Rik, Col8a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470L03.T7 (MSMg01no470_l03.b1)MSMg01-470L03.TJ (MSMg01no470_l03.g1)
ACCAG553638AG553639
length1,320756
length of high quality
(start - end)
---568 (79 - 646)
definitionCHROMAT_FILE: MSMg01no470_l03.b1 PHD_FILE: MSMg01no470_l03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:41 2005CHROMAT_FILE: MSMg01no470_l03.g1 PHD_FILE: MSMg01no470_l03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCGGATGGGGACCGTGCGCCGGCCGCTCCAATAATAATATGTGGGCGGG
GCGTCGCGCAAAGAACGCTCCCCCCTATATGTTTGTGGTTTGCAGAAGAA
AAGAGGGGGCGGGAGCGCCNCCTCCCGCGCCCGCCTTGTTTTTGCTCGCC
CGCCCCAACCAAACCATACGCCGCCCAACAGACGACCGNTGCCCCCTCAC
AACAGGAAGCGGCGGGGCTCTTTCCCCTCCACTCACAAACCACACAAAGA
GCGGACNNCCCNAGGTGNTCGCCAAATAACACCTATTCTTACACACGACA
TCAGTGCGTCGTTCGCTTACATCGCACCGCCAGCATCTATATACTTTCAC
ATATACCCTGTCTGCCCCCGCACCGCGAGTGTAGCGACAAGCGCATACGT
CACACCGTGCCCGTCCCCATGAATAGCGATACATAACACGTACTCGGATG
CCCCTATACACAAGAACACCCCTCTATGTCTCCCTCCTGTTCAAATTACT
TCTCCGCCCGCCTCATCTCCGCCCCGCCCGCGGGACGGCGCAGAACACGC
CACTGCCGCGCCTTTTATCTGCATTAACGCAATCCCTGTATCAGTTATAC
TACAACACCNTTNTCACTACACTGCTCTTTCTACGCGGTATGGAAATAAA
CATCCGCCTGCCACCGCTCTTATACACGCCGCAATCAGTTCCCGCGTGGA
CGTATCGCCCACGCGCTACACACGAGACGCGTCAGACTGCACCNACTCTG
CCCGTCCGCCGCACATGACGCCCGCCCACTGATACATCGCGACTCCGTTC
ACTCTGTACTAATCTTGTACCATCTCGCCCCCGCTACACGACGCATTACC
TGCTCCGCGCTTAGGAATGTCTCTCTATATCGCGCGTACTATCCACAGCG
GCTCACACCCGTTAGCGACCGACTCTAATAATCGATTTGTANTAGCAATA
AGGAACGACGGACACCGACGGGGCGGATGTAGATACTCCACGGNACTTCC
ATATAATACGCCCACTGTCCGCAACGCGCGCTCCCCTCGACGCGGCGCCG
CCGCCCGCACACTCACGATGATAGCTTCATGTGTATTCCTGTACGTGCGC
CCGTCTGATAGTACACGTTTACTGTCTAACGACACGTCCTCCCNCTCCTA
TGTCTACTCGTACCCTCCCTATTCTCCGCTCACTCTATGGCACGTTTACT
CTCTCCGCGTGCCTCCTNCGTGATAGAACACGCCATCATACGCTTCCTGA
CAGCGCCTACGCGAGATCGAACATCACGTCTCGTACGCTGTTCGACAAGG
CANTACCGCACACGTCAGCN
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAATTTTATTTCAAATTATTA
ATTTCGTAAGAGATGTTAAACAATTAAGTCATACTTTGTTGATAACTTTG
CTCAAAATATAATCAGAAGTCAATCTAAATAATTGGCAGTGTCTACAATG
TATACATTATATATCAAGAGGTATTCACTAAAGCAGCTTATTCTACATCA
CTATCTCCAGCTATATATTATACATATTATACAACTGAGCTACTGAACTA
GAGCTAGTTCGAACTGGGACATAACGTATGGTGTTTAAAATGTTCCAAAT
CACTGTCTCATTTCTAATATATAAAATCCAATAATAATAGCAAAATCCAC
CAACCTCTTTCTAAATCGATGCTTATATATTTATATAGACATACTTGGCT
GATTATCCGTAAATATAAGAAATAACTGTAGTAAGGCATATAATTAATAC
CACTCCAAAGAAAATGCATCCATAGTATTAATGTGCAGCTGCTGGAAAGA
GGTGCACGGTTGCTAGAGAGCACAGGTGGAAGACCATTTTCACTATAGAA
ACTATTATTAACAGATTTGATCATTTTGCAATTTAAAAAAAGCTCTCAAA
AGATAAGTGAAATTTTGCTCTCATTCCTGCCACTGACCTTTATTTGTACA
ATTCTCCTTCTAAATAAGAATGTACATCCGTGCTACAATAGCTTTTAGTT
CACCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_l03.g1 MSMg01no470_l03.g1 CHROMAT_FILE:
MSMg01no470_l03.g1 PHD_FILE: MSMg01no470_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:41 2005
         (568 letters)



>mm_chr16_56695467_56696431
          Length = 965

 Score =  977 bits (505), Expect = 0.0
 Identities = 553/569 (97%), Gaps = 5/569 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaattttatttcaaattattaatttcgtaagagatgttaaacaattaagtcatactttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaattttatttcaaattattaatttcgtaagagatgttaaacaattaagtcatactttg 260

                                                                       
Query: 61  ttgataactttgctcaaaatataatcagaagtcaatctaaataattggcagtgtctacaa 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 ttgataactttgctcaaaatataatcagaagtcaatctaaataactggcagtgtctacaa 320

                                                                       
Query: 121 tgtatacattatatatcaagaggtattcactaaagcagcttattctacatcactatctcc 180
           |||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 321 tgtatatattatatatcaagagatattcactaaagcagcttatcctacatcactatctcc 380

                                                                       
Query: 181 agctatatattatacatattatacaactgagctactgaactagagctagttcgaactggg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 agctatatattatacatattatacaactgagctactgaactagagctagttcaaactggg 440

                                                                       
Query: 241 acataacgtatggtgtttaaaatgttccaaatcactgtctcatttctaatatataaaatc 300
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acataacgtatggtgtttaaagtgttccaaatcactgtctcatttctaatatataaaatc 500

                                                                       
Query: 301 caataataatagcaaaatccaccaacctctttctaaatcgatgcttatatatttatatag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caataataatagcaaaatccaccaacctctttctaaatcgatgcttatatatttatatag 560

                                                                       
Query: 361 acatacttggctgattatccgtaaatataagaaataactgtagtaaggcatataattaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acatacttggctgattatccgtaaatataagaaataactgtagtaaggcatataattaat 620

                                                                       
Query: 421 accactccaaagaaaatgcatcca-tagtattaatgtgcagctgctggaaagaggtgcac 479
           |||||| |||||| |||||||| | ||||| ||||||| |||||||||||||||||||||
Sbjct: 621 accactgcaaagagaatgcatc-agtagtagtaatgtgaagctgctggaaagaggtgcac 679

                                                                       
Query: 480 ggttgctagagagcacaggtggaagaccattttcactatagaaactattattaacagatt 539
           |||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ggttgctaga-a-cacagatggaagaccattttcactatagaaactattattaacagatt 737

                                        
Query: 540 tgatcattttgcaatttaaaaaaagctct 568
           ||||||||||||||||||||||| |||||
Sbjct: 738 tgatcattttgcaatttaaaaaa-gctct 765


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 965
Length adjustment: 10
Effective length of query: 558
Effective length of database: 955
Effective search space:   532890
Effective search space used:   532890
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)